Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325H03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0225 + 18953016-18954686                                         27   6.9  
02_01_0606 + 4543031-4543177,4543287-4543709,4543836-4543952,454...    27   6.9  

>03_04_0225 + 18953016-18954686
          Length = 556

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 247 TSVHTV-RHLYTFFFVFPTYDDSLERLYQLRPNM*VSSQGSNRSGANTGPSKSSAS 411
           ++VH + R++  +  +   Y+D+L R+YQ   +   S  G   S +   PS S+ S
Sbjct: 318 SAVHPLTRYVMNYLVLLADYEDTLARIYQQGESTLTSGSG---SASRVSPSSSADS 370


>02_01_0606 +
           4543031-4543177,4543287-4543709,4543836-4543952,
           4544064-4544423
          Length = 348

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 349 VSSQGSNRSGANTGPSKSSASQNLSPDRKR 438
           V++  +N  G    PS +S   ++SP RKR
Sbjct: 89  VTASANNGGGGGNNPSSTSEGGSVSPSRKR 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,267,686
Number of Sequences: 37544
Number of extensions: 177499
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)