Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    44   2e-05
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    33   0.034
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   2.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.8  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   9.0  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.0  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +3

Query: 51  NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEAPANPTSAAS 221
           +RED L++FC+    D  + +FFLES+NW  ++A +  +E     ++    P+S  S
Sbjct: 2   DREDILKEFCNRNNIDVSQGRFFLESTNWNYELATALLHEVIPPEEDHGLQPSSDVS 58


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +3

Query: 42  MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAD 188
           M  +    +  FC +T +  ++++ +L  ++  L  A++ F+E+GG  D
Sbjct: 1   MDGDEASLVANFCAITNSTPEKAQEYLSVADGDLSTAITLFFESGGVTD 49


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 177 GNADEAPANPTSAASFSVLPDS 242
           G+  ++P  P+S++SFSV P+S
Sbjct: 175 GDYSDSPLEPSSSSSFSVPPES 196


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 136 QFEDSKKNLLRSSSAPVTSQN*RNVSSLFADMVISNIYFVLIYK 5
           +F    +NL  +++AP T +  R  SS  A    S +Y    YK
Sbjct: 356 EFAGFSRNLTNTAAAPTTYEYKRPTSSYTAKDATSKVYRSNTYK 399


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 248 GITARLTSGTKVPEKRKKENLKYKVWDHRI 337
           GIT +      +    +KEN+ YK W H I
Sbjct: 217 GITVKFMKAL-ISRSWRKENVSYKHWIHNI 245


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 249 PYRCLAEQRMMPHSLD*LEPHLHYHRSHRNLKEQ 148
           PY C A   + P+S+   + HL + RS  ++ E+
Sbjct: 400 PYSCSAPAIVFPNSIKGNKDHLKFGRSWCDMDEE 433


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 72  QFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNADEA 194
           Q  ++T ++ D SK++LE     L+   S    N  N D A
Sbjct: 87  QALNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSA 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,594
Number of Sequences: 5004
Number of extensions: 34675
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)