Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    27   6.2  
U64837-9|AAB04843.2|  309|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine re...    27   6.2  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   6.2  
AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical...    27   6.2  
Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical
           protein F53F1.8 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 308 IYWHWLFYTINVLYYTSKKYINHLYNMCIINYITF 204
           IY+ ++ Y++ +  Y +K+    LYN+  + Y TF
Sbjct: 256 IYFAFVVYSLQINQYMNKRIFYFLYNILCVIYSTF 290


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 501 ESLTNRCAQICYNFFSLKISVLNINILDLFDEN*IINEMYNWLQN 367
           E++      I YN+    I VLN   L   +EN  ++ ++N L+N
Sbjct: 127 ENVNVTLTNIFYNYLHANIEVLNQLNLPAAEENKFLHHIFNLLKN 171


>U64837-9|AAB04843.2|  309|Caenorhabditis elegans Hypothetical
           protein T27E4.1 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 450 KISVLNINILDL--FDEN*IINEMYNWLQNY-IQNFMIYEL 337
           K ++L I I D+  FD+N I+ EM  W+  + I  F  +EL
Sbjct: 122 KNTLLRIQICDIDEFDQNVIVAEMDYWINTHIISQFTQFEL 162


>AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine
           receptor, class i protein27 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 226 VS*ITSHFYNKIIIPLIIFNMNRINSNQIYLVMLN*SYIL 107
           +S   + F N  +I LIIF+ +R++S + YL+    S ++
Sbjct: 23  ISGTVAFFLNTFVIYLIIFHSSRLDSFKFYLLAFQISCLI 62


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 217 ITSHFYNKIIIPLIIFNMNRINSNQIYLVMLN*SYIL 107
           + S   N I I  +IFN NR+ + + YL++   S +L
Sbjct: 21  LVSFILNSIGIYFLIFNTNRLGNFKYYLLLFQLSCVL 57


>AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical
           protein Y54G2A.32 protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 266 YTSKKYINHLYNMCI-INYIT 207
           Y+ KKYIN+LYN  I   Y+T
Sbjct: 98  YSLKKYINYLYNQAISTKYLT 118


>Z81047-12|CAB60283.1|  322|Caenorhabditis elegans Hypothetical
           protein C41G6.14 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 202 YNKIIIPLIIFNMNRINSNQIYLVMLN*SYILLKF 98
           +N ++I  +IF+  RI S + YL+    S +LL F
Sbjct: 29  FNCLVIYFLIFHSGRIGSFKFYLLGFQISCVLLVF 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,731,039
Number of Sequences: 27780
Number of extensions: 214294
Number of successful extensions: 442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)