Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325G10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 29 0.32
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 28 0.73
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 0.73
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 0.97
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.2
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 26 3.0
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 3.0
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 26 3.9
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 26 3.9
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 5.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.0
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc... 25 9.0
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 9.0
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 29.5 bits (63), Expect = 0.32
Identities = 23/70 (32%), Positives = 28/70 (40%)
Frame = -1
Query: 353 DLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQY 174
D C S G E P N F N+Y R S + SS C T L F+ P Q
Sbjct: 85 DYLCKKVSKGPESPRV-NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFSV-PDVQPRLYT 142
Query: 173 DSRKNRSIPY 144
+S N + Y
Sbjct: 143 NSSTNPDVLY 152
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.3 bits (60), Expect = 0.73
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 106 DPQLLNAFKLEMSYGIERFFLLSYCLACCWPGLGAKNNLRV-VRQWAELEFVFPN 267
DP + N +L Y I LLS ACC G + N+++ V + E+ V+PN
Sbjct: 603 DPYIENEMRL---YRIR--VLLSLWTACCVTDEGKEKNIKIAVEIFREISIVYPN 652
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 258 HELQFRPLPHHAEIILRSETGPTARQT 178
H Q PLP+H + ET PT QT
Sbjct: 622 HNKQTNPLPYHIVYMFSFETSPTVFQT 648
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 386 GIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLF 213
G T ++ L + C +SIG T + +N+Y F TN S + +T R F
Sbjct: 521 GSYTQTKEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHF 578
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 250 PVPPIASPRGD-YSSLRDRANSTPNNMTVEK 161
P PP + D Y +L D A +PN MT++K
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKK 1129
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 317 PRCQLMSTCNIGQVKNRGYL*QYLVLT 397
P C++ +CN Q +G+L +++V T
Sbjct: 292 PVCEIALSCNYDQTSFKGFLTRFMVYT 318
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 301 IVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANST 185
+ S++ +T L+S T +P PP++SP S N +
Sbjct: 317 VSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNES 355
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -3
Query: 420 SKCHRTSFVKTRYCHKYPRFFT*PMLHVDINWHRGPGY 307
+K HRT ++ Y H P++ H ++ H P +
Sbjct: 75 TKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -3
Query: 420 SKCHRTSFVKTRYCHKYPRFFT*PMLHVDINWHRGPGY 307
+K HRT ++ Y H P++ H ++ H P +
Sbjct: 75 TKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 19 FILSTYKFNK*FYVTFYASLRN 84
F++ST++ N Y+TF A RN
Sbjct: 96 FMISTFRLNSKVYLTFTACRRN 117
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -2
Query: 475 FVPRIIRIGNDTSLVVYS--FQMSQDVLRQNEV 383
F P++IR+G S+ V++ F + + +++Q E+
Sbjct: 1363 FFPKVIRVGFGDSISVHAKEFTLEEQMIKQMEL 1395
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -2
Query: 475 FVPRIIRIGNDTSLVVYSFQMSQDVLRQNEVL 380
++PR++RIGN ++ V +S + + ++L
Sbjct: 1223 YIPRVVRIGNPETINVSVRDLSLEYQTEKQLL 1254
>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = -2
Query: 514 KHRS*SSAVLPLVFVPRIIRIGNDTSLVVYSFQMSQDVLRQNEVLSQISAIFYLTYVAR- 338
+HR S++L L V ++ +G + L +YS Q+ + V+ + LS+ YL+Y+ +
Sbjct: 104 RHRGPKSSIL-LRNV--VMGVGVEYLLPIYSPQIKRIVVLKENGLSKRPRRAYLSYLRQP 160
Query: 337 RHQLAP-RTRVRKIV 296
R +L P + VRK +
Sbjct: 161 RFRLPPVESLVRKYI 175
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 496 SAVLPLVFVPRIIRIGNDTSLVVYSFQMSQDVLRQNEVLSQ 374
SA+LP +F +IR+G+ +L V ++L EVLS+
Sbjct: 800 SALLP-IFDSILIRMGSSDNLSVNMSTFMVEMLETKEVLSK 839
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,073
Number of Sequences: 5004
Number of extensions: 46807
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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