Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325G10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0923 - 24392892-24394148                                         27   6.9  
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278...    27   6.9  
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475           27   6.9  
03_05_0964 - 29254947-29256183,29256275-29256381                       27   6.9  
06_01_0518 + 3750996-3751424                                           27   9.1  
04_01_0614 + 8049199-8049579                                           27   9.1  

>12_02_0923 - 24392892-24394148
          Length = 418

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 400 GRPVTFGNCRRRGTYRCLSGLFLARKPG 483
           GR V    C+RRG    +SGL   + PG
Sbjct: 177 GRHVAVAPCKRRGVVTIVSGLMAPQIPG 204


>11_06_0147 -
           20626854-20627181,20627267-20627377,20627461-20627846,
           20627949-20628057,20629375-20629421,20629506-20629646
          Length = 373

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 293 SNAYDRASSFGNTNSSSAHCLTT 225
           +N    A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369


>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
          Length = 465

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 283 MTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKTARF 149
           +T  L + T TP PP ++P    ++   R  S  +   VE  AR+
Sbjct: 29  VTACLATPTPTPPPPTSAPLAPAAAAARRELSAASRAVVEDEARY 73


>03_05_0964 - 29254947-29256183,29256275-29256381
          Length = 447

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 232 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 336
           R+W     +FP+E+ +S+   + F   GS+  +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208


>06_01_0518 + 3750996-3751424
          Length = 142

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 299 RFSNAYDRASSFGNTNSSSAHCLTTRRL 216
           R SNAY+  +S  N+   + HC   R L
Sbjct: 17  RVSNAYNSGASSSNSTGDTKHCRIMREL 44


>04_01_0614 + 8049199-8049579
          Length = 126

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 250 PVPPIASPRGDYSSLRDRANSTPNNMTVEKTARFRTT 140
           P  P+ S     SSLRDR +   NN     TA   TT
Sbjct: 43  PTAPLESTVISTSSLRDRESRDKNNAAATATAAASTT 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,813
Number of Sequences: 37544
Number of extensions: 301508
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)