Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...   116   3e-27
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    55   6e-09
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    54   2e-08
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    27   1.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   6.8  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   9.0  

>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score =  116 bits (278), Expect = 3e-27
 Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
 Frame = +1

Query: 97  LFSLFKINQLRKTHTFETVRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDT 276
           + S      L++ ++   VR RFAPSPTG+LHLG LRTAL+NYL+AK  NG FILR+EDT
Sbjct: 16  IVSKISFYSLKRCNSTAVVRTRFAPSPTGFLHLGSLRTALFNYLWAKKSNGKFILRLEDT 75

Query: 277 DQTRKVEGALEALVSDLEWAGIVCNEGPGT-GTYGPYVQSERLNIYQKW 420
           DQ RKV G+   +   L+   +  +EGP   G YGPY QS RL IYQK+
Sbjct: 76  DQKRKVTGSDLEIYKVLKQFNLQWDEGPIVGGPYGPYEQSSRLQIYQKY 124


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 55.2 bits (127), Expect = 6e-09
 Identities = 24/64 (37%), Positives = 39/64 (60%)
 Frame = +1

Query: 151 VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLE 330
           V  RF P P+GYLH+G  + AL N  FA  ++G  I+R +DT+ +++     +A++ D+ 
Sbjct: 207 VVTRFPPEPSGYLHIGHAKAALLNQYFANKYHGKLIVRFDDTNPSKENSEFQDAILEDVA 266

Query: 331 WAGI 342
             GI
Sbjct: 267 LLGI 270


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 24/63 (38%), Positives = 34/63 (53%)
 Frame = +1

Query: 151 VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLE 330
           V  RF P P GYLH+G  +    N+ FA+ HNG   LR +DT+   + E   E++   + 
Sbjct: 263 VVTRFPPEPNGYLHIGHSKAIAVNFGFARYHNGVCYLRFDDTNPEAEEERYFESIKDLVA 322

Query: 331 WAG 339
           W G
Sbjct: 323 WLG 325


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 118 NQLRKTHTFETVRVRFAPSPT 180
           N+LR T+T+ TVR R  P P+
Sbjct: 120 NKLRMTYTYHTVRRRDTPEPS 140


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 200 ALERLYIIIYSQNLIMARSYLELKIRIKRGK 292
           ALE L ++I   N+++    + LKIR K GK
Sbjct: 903 ALEFLMLMIRGNNILLIDDAMFLKIREKVGK 933


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 145 ETVRVRFAPSPTGYLHLGGLRTALYN 222
           E VR++  P+P+G  + GGL    +N
Sbjct: 112 EMVRLQKVPNPSGDFYAGGLGEPKFN 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,565
Number of Sequences: 5004
Number of extensions: 40632
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)