Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325G08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109... 116 2e-26
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 65 4e-11
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 61 6e-10
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 46 1e-05
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451... 46 1e-05
10_08_0526 + 18547154-18547197,18547320-18547467,18547558-185476... 30 0.98
01_06_1265 - 35862180-35863007 29 2.3
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 27 6.9
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 27 9.1
01_01_0304 + 2486387-2486724,2486968-2486986 27 9.1
>02_01_0157 -
1090653-1090886,1091205-1091361,1091538-1091638,
1091786-1091900,1092940-1093003,1093107-1093209,
1093331-1093432,1093542-1093617,1093672-1093790,
1093918-1094100,1094378-1094499,1095605-1095944
Length = 571
Score = 116 bits (278), Expect = 2e-26
Identities = 54/91 (59%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Frame = +1
Query: 151 VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLE 330
VRVRFAPSPTG LH+GG RTAL+NYLFA+S G F+LRIEDTD R + + EA++SDL
Sbjct: 46 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKKSEEAVLSDLA 105
Query: 331 WAGIVCNEGPGT-GTYGPYVQSERLNIYQKW 420
W G+ +EGP G +GPY QSER ++Y+++
Sbjct: 106 WLGLDWDEGPDVGGEFGPYRQSERNSMYKQY 136
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 413 KNGSAYKCFCTERRLNILRRDAIRSQRIPKY 505
++G+ Y+CFC+ L ++ A + Q P Y
Sbjct: 142 ESGAVYQCFCSSEELEQMKETAKQMQLPPVY 172
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 64.9 bits (151), Expect = 4e-11
Identities = 32/80 (40%), Positives = 47/80 (58%)
Frame = +1
Query: 142 FETVRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVS 321
F V VRFAP P+GYLH+G + AL N FA+ + G I+R +DT+ +++ +E L+
Sbjct: 203 FGEVCVRFAPEPSGYLHIGHAKAALLNKYFAERYQGRLIVRFDDTNPSKESNEFVENLLK 262
Query: 322 DLEWAGIVCNEGPGTGTYGP 381
D+E GI + T Y P
Sbjct: 263 DIETLGIKYDAVTYTSDYFP 282
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 60.9 bits (141), Expect = 6e-10
Identities = 30/89 (33%), Positives = 50/89 (56%)
Frame = +1
Query: 151 VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLE 330
V VRFAP P+GYLH+G + L N FA+ + G I+R +DT+ +++ +E ++ D+E
Sbjct: 208 VCVRFAPEPSGYLHIGHAKAGLLNKYFAERYKGRLIVRFDDTNPSKESNEFVENVLKDVE 267
Query: 331 WAGIVCNEGPGTGTYGPYVQSERLNIYQK 417
GI + T Y P + N+ ++
Sbjct: 268 TLGIKYDIVTYTSDYFPQLMEMAENLIKQ 296
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 151 VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLE 330
V RF P P GYLH+G + ++ AK NG LR +DT+ + + ++ + +
Sbjct: 272 VMTRFPPEPNGYLHIGHAKAMFIDFGLAKERNGHCYLRFDDTNPEAEKKEYIDHIQEIVR 331
Query: 331 WAG 339
W G
Sbjct: 332 WMG 334
>01_01_0608 -
4513604-4513701,4513790-4513919,4514027-4514116,
4514225-4514330,4514442-4514542,4514678-4514773,
4514860-4514959,4515133-4515269,4515563-4515661,
4515740-4515937,4516058-4516235,4516635-4516690,
4516781-4516933,4517248-4517340,4517422-4517523,
4517609-4517650,4517812-4517855,4518087-4518186,
4518323-4518394,4518499-4518621,4519309-4519452
Length = 753
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 151 VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLE 330
V RF P P GYLH+G + ++ AK NG LR +DT+ + + ++ + +
Sbjct: 273 VMTRFPPEPNGYLHIGHAKAMFIDFGLAKERNGHCYLRFDDTNPEAEKKEYIDHIQEIVH 332
Query: 331 WAG 339
W G
Sbjct: 333 WMG 335
>10_08_0526 +
18547154-18547197,18547320-18547467,18547558-18547604,
18548216-18548270,18548365-18548403,18548517-18548688,
18549135-18549201,18549378-18549434,18549637-18549873,
18551549-18551629,18551803-18551935
Length = 359
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 287 GKLKEL*RPL*AIWNGPESCAMKARVLVPTVRTYR 391
GK EL +WN P SCA ARVLV + R
Sbjct: 60 GKFDELVVIAGIVWNPPTSCAWAARVLVNSAEACR 94
>01_06_1265 - 35862180-35863007
Length = 275
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 193 LGGLRTALYNY-LFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLEWAGIVCNEGPGTG 369
+ GL AL + L A +H+G + + T + V LV + +V G G
Sbjct: 55 MSGLLAALMLHCLTAAAHDGRYTSVVAGTARGWNVPCLALRLVKNAMLFPVVALIGAGWS 114
Query: 370 TYGPYVQSERLNIYQKWFSLQMFL 441
P+VQ+ LN+ LQ+++
Sbjct: 115 LPEPFVQARELNVLTAMVPLQVYM 138
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 383 YGP*VPVPGPSLHTIPAHSRSLTRASRAPSTFR 285
YGP G + HT P RSL+R S S R
Sbjct: 98 YGPTSLAGGGAAHTPPGSGRSLSRCSSTSSRIR 130
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 21 IP*TRLYHWLIAILNYDNKPFI*INSF 101
IP R HW +AI+N +K F ++SF
Sbjct: 281 IPIHRNVHWCLAIINMKDKTFQYLDSF 307
>01_01_0304 + 2486387-2486724,2486968-2486986
Length = 118
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 148 TVRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFI 258
T+ F PSP GGLRT YN+L G F+
Sbjct: 36 TLAAEFEPSP------GGLRTTTYNHLAVAGLAGTFL 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,992
Number of Sequences: 37544
Number of extensions: 228569
Number of successful extensions: 492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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