Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325G08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-6|AAK39275.2|  481|Caenorhabditis elegans Glutamyl(e)/g...   115   2e-26
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    46   1e-05
Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lecti...    29   2.0  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF036706-6|AAK39275.2|  481|Caenorhabditis elegans
           Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
           protein.
          Length = 481

 Score =  115 bits (277), Expect = 2e-26
 Identities = 54/91 (59%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
 Frame = +1

Query: 145 ETVRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSD 324
           + VRVRFAPSPTG+LH+GGLRTA +NYLFAK + G FILRIEDTD+TR V+ A + + S 
Sbjct: 9   QNVRVRFAPSPTGHLHIGGLRTAFFNYLFAKKYGGDFILRIEDTDRTRFVDDAQDQIYSS 68

Query: 325 LEWAGIVCNEGPGT-GTYGPYVQSERLNIYQ 414
           L +  ++ +EGP   G +GPY QS+RL IY+
Sbjct: 69  LNFYNLLPDEGPREGGKFGPYEQSKRLEIYR 99



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +2

Query: 416 NGSAYKCFCTERRLNILRRDAIRSQRIPKYDNRC 517
           +G AY+CFC+E RL++LR+ A +   IPKYD +C
Sbjct: 108 SGHAYRCFCSENRLDLLRKTAEKRGEIPKYDRKC 141


>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical
           protein ZC434.5 protein.
          Length = 1149

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +1

Query: 151 VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLE 330
           V VRF P  +GYLH+G  + AL N  + ++  G  I+R +DT+  ++       +  DL 
Sbjct: 194 VVVRFPPEASGYLHIGHAKAALLNQYYQQAFEGQLIMRFDDTNPAKENAHFEHVIKEDLS 253

Query: 331 WAGIV 345
              IV
Sbjct: 254 MLNIV 258


>Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical
           protein Y41E3.4 protein.
          Length = 786

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +1

Query: 112 KINQLRKTHTFET---VRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQ 282
           K  +L K H       V  RF P P G LH+G  +    N+ +AK+  G   LR +DT+ 
Sbjct: 254 KTAELLKAHVAAVGGKVVTRFPPEPNGVLHIGHAKAININFGYAKAMGGVCNLRFDDTNP 313

Query: 283 TRKVEGALEALVSDLEWAG 339
            ++ E    A+   + W G
Sbjct: 314 EKEEEKFFSAIEDIVHWLG 332


>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 202 LRTALYNYLFAKS---HNGAFILRIEDTDQTRKVEGALEALVSDLEWAGIVCN 351
           L T LY+   A++     GA +L I+ +++ +K++  L        W G++CN
Sbjct: 155 LNTTLYSKPTAEATCNRLGATLLTIQSSEENQKIQSFLSIHQISQIWLGLICN 207


>AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lectin
           protein 43 protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
 Frame = +1

Query: 91  LTLFSLFKINQLRKTHTFETVRVRFAPSPTGYLHLGG---LRTALYNYLF------AKSH 243
           L +++ F ++Q+     + T    ++  P G++ L G   ++ +    LF       +S 
Sbjct: 9   LHIYATFSVSQITSRAPYNTQTPSYSGCPDGFIVLNGYTCIQVSTTKKLFMDALSDCQSF 68

Query: 244 NGAFILRIEDTDQTRKVEGALEALVSDLEWAGIVCNE 354
            G  ++ I ++   + +  A     SD +W G++C E
Sbjct: 69  PGGNLVSIHNSIDNKAL--AFSVTSSDPKWIGLICTE 103


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 235 KSHNGAFILRIEDTDQTRKVEGALEALVSDLEWAGIVCNE 354
           K + G+ +  + +  +TR +   ++    D  W G+VCN+
Sbjct: 151 KGYGGSTLFSVRNEQETRDMLDFVKDSNIDFLWTGLVCNQ 190


>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 362 PGPSLHTIPAHSRSLTRASRAPSTFRV*SVSSILSMNAP 246
           PGPS   + +  + +   S APS FR  S S+  S  AP
Sbjct: 534 PGPSTDQVTSEEQEIPATSSAPSIFRTESPST--SSTAP 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,221
Number of Sequences: 27780
Number of extensions: 217646
Number of successful extensions: 454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)