Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325G06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 51 5e-07
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 41 7e-04
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 27 6.9
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 27 6.9
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 27 9.1
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 27 9.1
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 27 9.1
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 27 9.1
02_04_0580 + 24065830-24065967,24066163-24067425 27 9.1
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 9.1
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 51.2 bits (117), Expect = 5e-07
Identities = 33/124 (26%), Positives = 62/124 (50%)
Frame = +1
Query: 148 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKG 327
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG++ S T
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLT 165
Query: 328 DKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVS 507
+ E G + A+ AL +K + E++ +H ++ +D ++T ++E EF+
Sbjct: 166 EFDH---PEKGDALYAMELALALEKLVNEKLHNLHSVASR----CNDPQLTDFVESEFLE 218
Query: 508 QQAD 519
+Q +
Sbjct: 219 EQVE 222
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 40.7 bits (91), Expect = 7e-04
Identities = 35/132 (26%), Positives = 57/132 (43%)
Frame = +1
Query: 124 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDF 303
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG++
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189
Query: 304 SSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQ 483
S T E H AL + A I+ + V +D ++T
Sbjct: 190 QSIVT--------PLTEFDHP--EKGDALYGELLSACPIYVFYSMVASR---CNDPQLTD 236
Query: 484 YIEEEFVSQQAD 519
++E EF+ +Q +
Sbjct: 237 FVESEFLEEQVE 248
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +3
Query: 141 ETFLPLSPVGLLLQQLPDEQGRI----REALQEIIGRFV 245
+ FLP++ +G ++++ E G+I +E++QE + F+
Sbjct: 24 DRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFI 62
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 51 KSAALQRVLRPIQGQPRCSERTEGISLTVFETFL--PLSPVGLLLQQLP--DEQGRIREA 218
K A LQRV+R ++ Q R S G + T+L P L +L +E+ +R
Sbjct: 295 KKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGFAEKLFSRLQKCNERFEVRMM 354
Query: 219 LQEIIGRFVGENH 257
+ ++I R +G +H
Sbjct: 355 MLKVIARTIGLHH 367
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 175 YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGG 291
+ + Y + E K+ K+SD WE I + T R G
Sbjct: 253 FLSFYDRSPEDLRKILGKISDQDWETIISHAQKCTPRPG 291
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 313 TTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERI 420
T + +G+ +TV+ G ALAKA+ T K+ AE++
Sbjct: 200 TVISKSEGAEFTVKDGFFCPALAKAVKTMKK-AEKV 234
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 10 SCYQNVDQGCRRTLSLPH-----CSAYYGQFKDNHVVANELKALASLYLKRSYHYL 162
S YQ V + + +PH CSA+Y + +HV + + R+ HYL
Sbjct: 14 SAYQEVKSSPKHAI-VPHNNLLGCSAFYNPVEGHHVQKPHIVPSCKVNFTRASHYL 68
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 105 YNVVVLELAVIRAAVRQT*SPSASLVDVLIA*VFL 1
YN V+LE A +RA+ T + +LVD L +F+
Sbjct: 422 YNRVILENATVRASAVSTLAKFGALVDALKPRIFV 456
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +1
Query: 262 LIKHVTKRGGKMDFSSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREV 441
L+K V + G ++FS T+ G + T G ++GA + + +++L I++
Sbjct: 354 LVKRVLRCFGPLEFSVAVTIFGGRNHAGTWAKGLDVGAYSCSNMVEQELPSGGLLIYQSF 413
Query: 442 TKNSDL 459
T +++
Sbjct: 414 TATAEI 419
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 135 VFETFLPLSPVGLLLQQLPDEQGRIREALQEIIGRFVGENH 257
+ E L L VG LLQQ P E E I+ V E H
Sbjct: 352 LMEEALVLQAVGSLLQQYPSENSTQLELKVRILAENVTEKH 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,771
Number of Sequences: 37544
Number of extensions: 257112
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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