Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325G04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 43 3e-05
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 42 4e-05
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 38 0.001
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 30 0.18
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 27 1.7
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 3.9
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 5.2
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 9.0
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 25 9.0
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 25 9.0
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 9.0
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 9.0
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 42.7 bits (96), Expect = 3e-05
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +1
Query: 331 DYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 510
D G VV HGTD+ L + T K +V+ GA P +DG NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAMFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177
Query: 511 TQR 519
+ R
Sbjct: 178 SNR 180
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 42.3 bits (95), Expect = 4e-05
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +1
Query: 331 DYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 510
D G VV HGTD+ L + T K +V+ GA P +DG NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAIFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177
Query: 511 TQR 519
+ R
Sbjct: 178 SNR 180
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 37.5 bits (83), Expect = 0.001
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 268 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGA 441
S + T D +K+A+ I + + G V+ HGTD+ L + T K +V+ GA
Sbjct: 93 SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151
Query: 442 QVPIFQPRSDGNNNLLCAVLIAATQR 519
P +DG NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 37.5 bits (83), Expect = 0.001
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 268 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGA 441
S + T D +K+A+ I + + G V+ HGTD+ L + T K +V+ GA
Sbjct: 93 SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151
Query: 442 QVPIFQPRSDGNNNLLCAVLIAATQR 519
P +DG NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/71 (22%), Positives = 32/71 (45%)
Frame = +1
Query: 70 KNEKGVLVPQKDIESVIRRLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDDKILYHIYE 249
K E G+ + ++ + +L +L + A+W NL+ TDK + D I +
Sbjct: 643 KYELGIAISGYALDKNVGKLVELINKAFWNTNLSNTDKLAIMLKTSVSGITDGIAEKGHS 702
Query: 250 YDELKDSSDFT 282
+ ++ +S T
Sbjct: 703 FAKVSSASGLT 713
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/54 (18%), Positives = 31/54 (57%)
Frame = +1
Query: 193 LALPDGKDTDDKILYHIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVL 354
LA G+ T + + +H+++ + + +++ +++ I +++ + DY +V+L
Sbjct: 18 LAAVHGETTSNSVTFHVFQQLDSTNLTNYQLENVITQVKELDKGPKDYLYWVIL 71
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 82 GVLVPQKDIESVIRRLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDDKILYHIYEYDEL 261
G+ Q ++ L LH D + NN K++++ L D + +I+ Y YD +
Sbjct: 444 GMFSSQDQCYILVFSLMMLHTDVFNSNNKHKMTKQEFINLCDIDELAPEIME--YYYDNI 501
Query: 262 KDSSDFTIDD 291
+ +DD
Sbjct: 502 TFTPFVNLDD 511
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 82 GVLVPQKDIESVIR-RLPQLHDDAYWKNNLAGTDK--KDYLALPDGKDTDDKILYHIYEY 252
G+ P K+++S L +L+ + WKNNLA D +++ L + + + HI
Sbjct: 179 GLEEPPKELQSHQSVELYRLYQTSLWKNNLADFDDLLLNFILLLQKQPDCVRNIKHIL-I 237
Query: 253 DELKDSS 273
DE +D+S
Sbjct: 238 DEFQDTS 244
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/40 (20%), Positives = 21/40 (52%)
Frame = -3
Query: 405 QHERQDRTTVRSCVGAVQNHESIVVMVKSLNISRHFYPIV 286
+ E + T C+G+ +H +I+ + + ++ FY ++
Sbjct: 342 EREYARKVTAEFCIGSALHHTNIIETLDIVEENKKFYEVM 381
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 419 FPTVS-NMKDRTEPPYAVVSVPCRTT 345
+P+ S ++ D PPY V+SVP T+
Sbjct: 212 YPSASASISDSLPPPYQVLSVPSVTS 237
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 88 LVPQKDIESVIRRLPQLHDDAYWK 159
LV Q D++ IRRL L D WK
Sbjct: 317 LVVQGDLQIAIRRLKPLLDAPSWK 340
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -3
Query: 357 VQNHESIVVMVKSLNISRHFYPIVYREI 274
+Q H + V L++ +H+ PI+Y +
Sbjct: 753 IQVHMRLKVSANKLDLRQHYIPILYESL 780
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 211 KDTDDKILYHIYEYDELKDSS 273
K D +ILY Y+Y E+K+ S
Sbjct: 10 KGKDAEILYEEYKYHEIKEMS 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,060
Number of Sequences: 5004
Number of extensions: 52834
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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