Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325G04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0921 + 7753744-7753821,7753921-7754856,7755285-7755377,775... 31 0.56
11_06_0050 + 19631164-19631987,19632103-19634023 30 1.3
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 1.7
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556... 29 2.3
07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415... 29 3.0
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 28 5.2
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 27 6.9
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 27 9.1
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 27 9.1
04_04_0136 - 23034715-23034794,23034930-23035104 27 9.1
04_01_0155 - 1778644-1780059 27 9.1
>07_01_0921 +
7753744-7753821,7753921-7754856,7755285-7755377,
7755462-7755815
Length = 486
Score = 31.1 bits (67), Expect = 0.56
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 217 TDDKILYHIYEYDELKDSSDFTIDDWIKMARDIKRFYH 330
+DD + H++ KDS+ D+W+ R +R+ H
Sbjct: 431 SDDDLSAHVHHPSPPKDSNSDIFDEWVYSGRGFERYLH 468
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 64 MLKNEKGVLVPQKDIESVIRRLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDDKILYH 240
+ KN ++ +K + ++ RL ++HDD K NL + L GK T ++YH
Sbjct: 158 LYKNVSELVGTKKKTDDLVSRLMEMHDDVESKRNLKVVSIVGFGGL--GKTTLASVVYH 214
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 29.5 bits (63), Expect = 1.7
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Frame = +1
Query: 121 RRLPQLHDDAYWKNNLAGTDKKDYLALPDGKD-TDDKILYHIYEYDELK----------D 267
RR+ + DD YW+ GT L LP D + I++Y+E K
Sbjct: 302 RRIIRSDDDCYWQWEPCGTVDSASLLLPAADSCVPDCLFPEIFDYEERKLALNNVLSSFP 361
Query: 268 SSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 384
+ D DD + M IK D DG+++ T++ G
Sbjct: 362 TLDLYRDDVVYMMTKIKD--DDPDGWIIAVNTESKRLEG 398
>01_01_0717 -
5559414-5559435,5559589-5559764,5559876-5559917,
5560039-5560080,5560268-5560370,5560466-5560527,
5561638-5561719,5567067-5567353,5568085-5568184,
5568584-5568651,5569819-5569860,5570001-5570032,
5572616-5572652
Length = 364
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 510 GRYQHSA*QIVVTIASRLKYWNLSTSEYNSLSD-GFQHERQDRTTVRSCVGAVQNHESIV 334
GR A V + R K N TS ++++ QH +Q+ + +R + ++QN S
Sbjct: 180 GRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRT 239
Query: 333 VMVKSLN 313
++ S+N
Sbjct: 240 IVGDSIN 246
>07_03_1405 +
26340645-26340921,26341003-26341226,26341315-26341562,
26341622-26342051,26342630-26343049
Length = 532
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 370 TAYGGSVLSFMLETVGKTVVLTGAQVPIFQP-RSDGNNNLLCAVLIAAT 513
T GG++L+F + T+ + + GA +F P R DG + +L +T
Sbjct: 425 TVPGGTMLTFPIATMHRDEEVWGADAGVFDPMRFDGGGGAMAKLLSFST 473
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -3
Query: 441 STSEYNSLSDGFQHERQDRTTVRSCVGAVQNH--ESIVVMVKSLNISRHFYPIVYREIRR 268
S E +L+D + Q + + S ++++H E +V+++K + H P V +R
Sbjct: 673 SCGEPQALADHVLNAWQRSSIINSIDPSLEDHVAEEVVLVLKLGLLCSHSSPKVRPSMRL 732
Query: 267 IFEFIVFVNMVQNFIIRVFSI 205
+ +++ +Q+F FSI
Sbjct: 733 VMQYLEREATLQDFAFSFFSI 753
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +1
Query: 172 GTDKKDYLALPDGKDTDDKILYHIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYD 339
G +K + +P DDK + D D S+ + ++K +++ + YH D
Sbjct: 482 GYGEKKSVKIPYNDLKDDKPSSKVVRKDRYSDESETDSETYVKKKKNLPKSYHHSD 537
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 307 RDIKRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQP 462
RD+K Y D +VLHG T GG + + T L GA + +P
Sbjct: 1232 RDLKIKYRQ-DAPLVLHGITCTFEGGDKIGIVGRTGSGKTTLIGALFRLVEP 1282
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 375 VRWFGPVFHVGNRRKDCCTHWC--SGSNISTSKRW*QQFVMRCADSGH 512
VRWF P GN R C +G I ++R ++ +R A+ G+
Sbjct: 228 VRWFYPAAAAGNARAQYNLGLCLQNGKGIKRNQREAAKWYLRAAEGGN 275
>04_04_0136 - 23034715-23034794,23034930-23035104
Length = 84
Score = 27.1 bits (57), Expect = 9.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 420 DCCTHWCSG 446
DCC HWC G
Sbjct: 30 DCCVHWCCG 38
>04_01_0155 - 1778644-1780059
Length = 471
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Frame = -1
Query: 185 FLSVPARLFFQYASSCSC--------GSLLITLSISFC---GTNTPFSFFSIPNVPPVY 42
+L++ RL A+ SC S ++ +S+ FC N +SF ++ VPP+Y
Sbjct: 115 YLALVTRLLDAEATDASCRWHVVRVYASAVLLMSMPFCLLMSLNALYSFLAVALVPPIY 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,276,534
Number of Sequences: 37544
Number of extensions: 331451
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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