Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325G03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a prote...    31   0.50 
AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical ...    30   1.2  
U37429-6|AAN63416.2|  342|Caenorhabditis elegans Serpentine rece...    28   3.5  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   8.1  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   8.1  

>AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a protein
           protein 32 protein.
          Length = 305

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 149 VMYYIIYMYKDVTVHIEMIYLRTFLFEDTL 60
           V Y++  + +DV +H+E + L  F F+D L
Sbjct: 127 VSYFVDVLKEDVNIHVETVTLNKFSFDDVL 156


>AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical
           protein Y32G9A.8 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 196 Y*WMKPKNLVLFIIYLLCTILFTC 125
           Y WM P  ++L I+ LL  ++FTC
Sbjct: 250 YGWMLPLAIILIILLLLFLVIFTC 273


>U37429-6|AAN63416.2|  342|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 69 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 167 TIYYLF---VMYYIIYMYKDVTVHIEMIYLRTFLFE 69
           T+ Y F   ++YY IY+ KD+ +   +I  RTF  +
Sbjct: 237 TLIYAFTQGILYYSIYIVKDMELKSTVIQFRTFAID 272


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 288 NIYNLF*LFVQISIPHFSSYKICFIYIVYKTTFMLP 395
           + Y  F  F Q+S  +FSS+ + FIY +Y  T   P
Sbjct: 418 SFYLYFPRFFQVS-HNFSSFSVLFIYCIYYPTKKCP 452


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 120  RCNCAY*NDIFEDFFI 73
            +C CAY ND F D FI
Sbjct: 2090 KCTCAYHNDTFSDKFI 2105


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 120  RCNCAY*NDIFEDFFI 73
            +C CAY ND F D FI
Sbjct: 2090 KCTCAYHNDTFSDKFI 2105


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 120  RCNCAY*NDIFEDFFI 73
            +C CAY ND F D FI
Sbjct: 2090 KCTCAYHNDTFSDKFI 2105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,679,903
Number of Sequences: 27780
Number of extensions: 178823
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)