Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325G02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 161 2e-40
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 159 1e-39
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 2.0
Z93393-7|CAB07694.1| 383|Caenorhabditis elegans Hypothetical pr... 29 2.7
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 29 2.7
AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical ... 29 2.7
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 2.7
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 29 2.7
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 3.5
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr... 28 3.5
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr... 28 3.5
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 27 6.2
AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog ... 27 6.2
AF003151-9|AAK18911.1| 168|Caenorhabditis elegans Hypothetical ... 27 6.2
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 8.1
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 8.1
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 161 bits (392), Expect = 2e-40
Identities = 79/121 (65%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
Frame = -2
Query: 406 VRK-IRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNT 230
VRK +R SVHFRRPKT R P+Y RKS P R+++D++ +IK P T+E++MKKIED+NT
Sbjct: 26 VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESSMKKIEDHNT 85
Query: 229 LVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGI 50
LVFIV ANKHHIK AV LY++ KVNTLI P +KKAYVRLA DYDALDVANKIG
Sbjct: 86 LVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVANKIGF 145
Query: 49 I 47
I
Sbjct: 146 I 146
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 159 bits (385), Expect = 1e-39
Identities = 75/119 (63%), Positives = 93/119 (78%)
Frame = -2
Query: 403 RKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLV 224
R++R SVHFRRP T + R ++PRKS PK ++MD + II+ PLT+E+AMKKIE++NTLV
Sbjct: 29 RQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLV 88
Query: 223 FIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII 47
FIV ANK+ IK AV KLY++ KVNTLI P +KKAYVRL DYDALDVANKIG+I
Sbjct: 89 FIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 29.1 bits (62), Expect = 2.0
Identities = 30/118 (25%), Positives = 47/118 (39%)
Frame = -2
Query: 379 FRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 200
F P E RHP R+ P+R + +K LT A+ + V +AN
Sbjct: 190 FAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPPTEPVAARTATAN 247
Query: 199 KHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRLARDYDALDVANKIGII*TVPYFL 26
+ HIK ++L D + +G +R R D L ++I +I +FL
Sbjct: 248 QRHIKLFEEEL-DTTPGGESYATVVNGCLTELLRKERIIDLLTNPDEIELIKQAGWFL 304
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 385 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 254
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
>Z93393-7|CAB07694.1| 383|Caenorhabditis elegans Hypothetical
protein Y48E1B.8 protein.
Length = 383
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 PSGLMSVLTLATFIS*SFLTAALIWCLFALV*TIKTKVLLSSIFFIAASDVRGNLMML*A 299
P+GL S+L L F S + W L L+ K++ L ++ ++ A +L L
Sbjct: 4 PAGLQSLLALIFFNRLSLVIFYSFWFLIGLLVLRKSQNALEAVRYVKAHSASVSLDSLEG 63
Query: 300 SMRF--LLGRDF 329
S F LL DF
Sbjct: 64 STEFRQLLEEDF 75
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2
Query: 331 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 167
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical
protein T01A4.1b protein.
Length = 637
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2
Query: 331 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 167
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 79 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 131
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2
Query: 331 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 167
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 647 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 699
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2
Query: 331 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 167
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 426 FYNLPLSLKCFSNRFHYFF 482
FYNL L KCFS FH+ F
Sbjct: 3300 FYNL-LQSKCFSKHFHWLF 3317
>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
protein T14E8.1c protein.
Length = 1018
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 47 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 163
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
protein T14E8.1b protein.
Length = 1030
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 47 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 163
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
protein T14E8.1a protein.
Length = 1086
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 47 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 163
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
protein F09E8.3 protein.
Length = 1369
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 325 TSLGI*GA*EVQTSWVCGNAQSCEFSVLSSHVHPFTTFL*ALSALVTGFTTF 480
T +G+ V T W+ A C LSSH H ++ L + F TF
Sbjct: 726 TEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYI-PLETNIATFLTF 776
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 325 TSLGI*GA*EVQTSWVCGNAQSCEFSVLSSHVHPFTTFL*ALSALVTGFTTF 480
T +G+ V T W+ A C LSSH H ++ L + F TF
Sbjct: 726 TEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYI-PLETNIATFLTF 776
>AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog
protein.
Length = 933
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 325 TSLGI*GA*EVQTSWVCGNAQSCEFSVLSSHVHPFTTFL*ALSALVTGFTTF 480
T +G+ V T W+ A C LSSH H ++ L + F TF
Sbjct: 726 TEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYI-PLETNIATFLTF 776
>AF003151-9|AAK18911.1| 168|Caenorhabditis elegans Hypothetical
protein D1007.4 protein.
Length = 168
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 381 ISADPRRLNLLGTLNTQGSLCLREIAWMPTTSLNSLSRLK 262
++ DP +LL + S ++ I W+P+ S+ S+ +LK
Sbjct: 34 MTRDPVSQSLLIAKIEENSTSIKSIEWIPSCSVKSIRKLK 73
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 8.1
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = -2
Query: 316 KRNRMDAYNIIKFPLTSE----AAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVA 149
KR +D +N+I FPL +E + ++ + T+V+ +H S I + ++D ++
Sbjct: 505 KRYLVDMFNLICFPLYTEYEQWESRLRVAFDKTIVYNLHLS----EILRCNRPVFDF-LS 559
Query: 148 KVNTLIRPDGKKK-AYVRLARDYDALDVANKIGI 50
K ++++P K+ Y+ + DA A K G+
Sbjct: 560 KNKSMLQPITLKEIVYLIEQSNMDAKSFAVKFGL 593
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 8.1
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = -2
Query: 316 KRNRMDAYNIIKFPLTSE----AAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVA 149
KR +D +N+I FPL +E + ++ + T+V+ +H S I + ++D ++
Sbjct: 505 KRYLVDMFNLICFPLYTEYEQWESRLRVAFDKTIVYNLHLS----EILRCNRPVFDF-LS 559
Query: 148 KVNTLIRPDGKKK-AYVRLARDYDALDVANKIGI 50
K ++++P K+ Y+ + DA A K G+
Sbjct: 560 KNKSMLQPITLKEIVYLIEQSNMDAKSFAVKFGL 593
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 27.1 bits (57), Expect = 8.1
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = -2
Query: 316 KRNRMDAYNIIKFPLTSE----AAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVA 149
KR +D +N+I FPL +E + ++ + T+V+ +H S I + ++D ++
Sbjct: 505 KRYLVDMFNLICFPLYTEYEQWESRLRVAFDKTIVYNLHLS----EILRCNRPVFDF-LS 559
Query: 148 KVNTLIRPDGKKK-AYVRLARDYDALDVANKIGI 50
K ++++P K+ Y+ + DA A K G+
Sbjct: 560 KNKSMLQPITLKEIVYLIEQSNMDAKSFAVKFGL 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,494
Number of Sequences: 27780
Number of extensions: 235379
Number of successful extensions: 778
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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