Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   1.7  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.9  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   6.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   9.0  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 14  IQSAFHRLSG*IFCKTKFIQFNTV*TIESQLGTEYYNFHVSITIHLDRHLILFISILQKQ 193
           ++S +H   G I+   +  Q NT+ ++ S L   +  FH++ T   D +L   + + QK 
Sbjct: 664 VRSEYHNSEGAIYLYYENRQSNTLKSLSSTLIRTFSTFHLATTFQ-DTNLPSGVQLQQKY 722

Query: 194 I 196
           +
Sbjct: 723 V 723


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 91  CLNCIELYKFCFAEDLPTEPVKRTL 17
           CL  ++    CF   +PTEP+ + L
Sbjct: 54  CLGLLDTILSCFELPIPTEPIMKAL 78


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 154 IQMYCY*HVEIVILCP*LGFYCLNCIELYKFCF 56
           ++ Y Y H ++  LCP    Y   C+ +   CF
Sbjct: 161 VRPYFYKHADLKQLCPKWNQYLETCVLVQSRCF 193


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 13  YPKCVSQAQWVDLLQNKIYTIQYSLDNRIPI 105
           + K V   QW  +L  ++Y   + L N +P+
Sbjct: 5   FKKYVKMRQWPHVLSLRVYASYFLLYNNLPL 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,731
Number of Sequences: 5004
Number of extensions: 49807
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)