Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832...    29   2.3  
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156...    27   6.9  
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073...    27   9.1  

>05_03_0089 -
           8327044-8327142,8327238-8327306,8327413-8327504,
           8327932-8329042
          Length = 456

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 211 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 321
           +G V+  F     V+EI +  P+ T  + +KRPMW+G
Sbjct: 242 LGAVSFAFAGHNVVLEIQATIPS-TPERPSKRPMWRG 277


>08_01_0185 +
           1558580-1558755,1558848-1559737,1559828-1559919,
           1560018-1560086,1560218-1560316
          Length = 441

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 211 VGKVTMLFPPSTFVIEIASPEPN*TSVQVAKRPMWKG 321
           +G V   +     V+EI +  P+ T  + +K+PMWKG
Sbjct: 227 LGDVAFAYAGHNVVLEIQATIPS-TPEKPSKKPMWKG 262


>08_02_0379 -
           16506775-16506950,16507037-16507096,16507187-16507375,
           16508131-16508224,16508276-16508300,16508690-16508796,
           16508903-16509021,16510520-16510658
          Length = 302

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 294 LHRGLIGFWRGYFNHKSTRRK*HCNFSNCT*YGIC 190
           LH G++G W  +   K  R K   NF+N T   IC
Sbjct: 110 LHHGILGIWYSHILSKLYRNK---NFNNVTGDVIC 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,490
Number of Sequences: 37544
Number of extensions: 291284
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)