Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.051
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.051
 Identities = 33/171 (19%), Positives = 73/171 (42%), Gaps = 5/171 (2%)
 Frame = +1

Query: 7   VDDHPVSSPLPVATSPEPRETTTELDESVKVTKDSRSNSPLPAE----VPLPRESPIPAE 174
           ++  P+  P P  T+    +  ++  +    T ++R +S L  +     P+  E PI A 
Sbjct: 206 LEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSE-PIDAY 264

Query: 175 SHIPVDDLITSIETPLESTIQEVASVDDQPEVEREKSDVPLEPVRTEVVEPM-ESTEPEN 351
               +     S  TP  S    + +    PE+++E  D+  + ++TE+   M +   PE 
Sbjct: 265 EMHQISKKKLSPATPKGSKCSMITT----PEIKKEVEDMEYDDIKTELSTGMNDDIPPET 320

Query: 352 SLMSVSAEPLKMKDSLASISPEPLEVKDPLATVIPEQLEEXESVTTEPLEV 504
                + + L + DS+  +   P+++ D +  +   + E+   ++    E+
Sbjct: 321 EEEEENDKKLDL-DSI-DMMQLPIQLDDGIDILDDVKCEDERVISIPDKEI 369


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 366 LC*TA*NEGFSGVHKSRTARSEGSFGDCNSRTARRXGVCNY 488
           +C T   +  SG H S    S G+  DC++    R  +C Y
Sbjct: 293 ICVTTGTKCVSGEHLSV---SGGALNDCHAEVVARRCLCEY 330


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 58  PRETTTELDESVKVTKDSRSNSPLPAEVPLPRESPIPAES 177
           P+E+T  L  +  V+  + +N+   +++ +PR S +   S
Sbjct: 710 PKESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTS 749


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.300    0.122    0.323 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,732
Number of Sequences: 438
Number of extensions: 2414
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (20.8 bits)