Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325F10f
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 125 2e-30
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 1.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 1.4
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 1.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 3.1
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 24 7.2
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 24 7.2
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 24 7.2
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 24 7.2
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 125 bits (302), Expect = 2e-30
Identities = 62/123 (50%), Positives = 90/123 (73%), Gaps = 2/123 (1%)
Frame = +2
Query: 26 EIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 199
+I+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 200 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 379
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 380 YDA 388
++A
Sbjct: 124 HNA 126
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.0
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 318 LGLGRILRSPTKTTCLPLNFFSSSRTS 238
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 1.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 291 ETVRSCLSPATKPVLLTNKRGHAQ 362
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 188 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 280
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 2 RLVPNRHEEIIKASGAEADSFETSISQALVELETN 106
R ++ + I +SG+E +F+T+ISQ E++T+
Sbjct: 23 RFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 151 SFCNVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLLVP 17
S+ NV + F G +++ EGIR++ + FDD+ +P
Sbjct: 66 SYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIP 110
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 PNRHEEIIKASGAEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKEIEL 166
P I+ SG + T S EL + S +K L + Y+T A+++EL
Sbjct: 21 PEGRPFILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVEL 74
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 5 LVPNRHEEIIKASGAEADSFETSIS-QALVELETNSDLKAQLRELYITKAKEIE 163
L+PN++E +K + +AD S ++ ELE +L + + K +I+
Sbjct: 88 LIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQ 141
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 14 NRHEEIIKASGAEADSFETSISQALVELETNSDLKAQLRE 133
N++++I+ +E+D SIS E E SD K+ ++
Sbjct: 433 NQNDQILPNETSESDDDANSISSMENEEERTSDSKSSAKQ 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,763
Number of Sequences: 5004
Number of extensions: 28322
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -