Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F10f
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.18 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   8.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.7  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 56  DSFETSISQALVELETNSDLKAQLRE 133
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +2

Query: 161 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 340
           EL   KS +  +P+P  +    +      + +KK +G    F   +    K S K R  +
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYK--ANKASKKKREKS 609

Query: 341 KQKRPRSRTLT 373
             K+ R  T T
Sbjct: 610 SAKKERKATKT 620


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 295 VSNKDYMFTTELLFELTD 242
           +SN   M  TELL ELT+
Sbjct: 2   LSNNSSMTQTELLQELTN 19


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 237 LIWIF*KAFSLGIGT*MMIDFLLCSSISLAFVM 139
           +IWIF  + SL   + M I  L    I +AF M
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 204 GIGT*MMIDFLLCSSISLAFVM*SSRSWALRSELVSSS 91
           G+ T +++  L+C SIS          W L  E +  S
Sbjct: 416 GLITGLIMRVLICGSISEEQKFDDEAHWELEEESLQGS 453


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 360 ERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNF 259
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 552 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 585


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 237 LIWIF*KAFSLGIGT*MMIDFLLCSSISLAFVM 139
           +IWIF  + SL   + M I  L    I +AF M
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 360 ERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNF 259
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 642 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 675


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,567
Number of Sequences: 438
Number of extensions: 1884
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)