Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   168   5e-43
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    54   2e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    29   0.42 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   1.3  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   1.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   3.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.0  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   5.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.0  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  168 bits (408), Expect = 5e-43
 Identities = 77/140 (55%), Positives = 105/140 (75%)
 Frame = +1

Query: 100 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 279
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 280 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 459
           ++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 460 LGPEKTSFFQALSIPTKISK 519
           + P KTSFFQAL IPTKI++
Sbjct: 128 MEPGKTSFFQALGIPTKITR 147


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
 Frame = +1

Query: 37  KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 216
           K  RS   TL++  ++     K+  F  + Q LD +   +I    N+ +  +++IR   +
Sbjct: 3   KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61

Query: 217 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 381
           GS I  MGK  +M KA+     ++H +N   L KLL    G VG +FT     EV     
Sbjct: 62  GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116

Query: 382 ENKVQAP-ARPGAIAPLSVVIPA 447
           E+ VQ   AR GA+AP + VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 230 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 337
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 296 RAGLLSRWSLMALRIIVFFPMSTILEPR 213
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 374 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 249
           L +T  +S    + PTLP +   + S +G+LSR + + ++ I
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +2

Query: 167 PITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSP 346
           P+T      S SV     PV+ S   T+  + P  +T  T   + NC  TS + L + +P
Sbjct: 490 PLTTTNCTTSTSVPYTSTPVTSS-NYTISSSTPVTSTPVT---TTNCT-TSTSVLYTSTP 544

Query: 347 AETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPAS 463
             ++  + TNC  T + +     P+     +   +TP +
Sbjct: 545 VTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTPVT 582


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 470 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 300
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 299 SRAGL 285
           S   L
Sbjct: 195 SEEEL 199


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 389  LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 228
            LFSN + R +    R+ T     L+ GN++     +  W+L+A   I  F  +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 148 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 294
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 506 VGMERAWKKEVF-SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSL-SRTSTRSPRVN-- 339
           +G + +W    F S P+P    G+T D+ +  PG+   +++F  +  ++   + P  N  
Sbjct: 679 IGGDVSWGASTFQSKPQPSFSFGLTLDDKSNTPGK--NFSIFGKTAETQVEQKKPENNVL 736

Query: 338 TKP 330
           TKP
Sbjct: 737 TKP 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,869
Number of Sequences: 5004
Number of extensions: 51298
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)