Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F07f
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   188   3e-49
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   188   3e-49
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    46   2e-06
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   8.6  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   8.6  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  188 bits (459), Expect = 3e-49
 Identities = 87/128 (67%), Positives = 107/128 (83%)
 Frame = -3

Query: 505 AXAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHV 326
           A AVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V GGGHV
Sbjct: 13  ATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHV 72

Query: 325 AQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGAR 146
           +Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GAR
Sbjct: 73  SQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGAR 132

Query: 145 ARYQKSYR 122
           AR QKSYR
Sbjct: 133 ARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  188 bits (459), Expect = 3e-49
 Identities = 87/128 (67%), Positives = 107/128 (83%)
 Frame = -3

Query: 505 AXAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHV 326
           A AVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V GGGHV
Sbjct: 13  ATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHV 72

Query: 325 AQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGAR 146
           +Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GAR
Sbjct: 73  SQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGAR 132

Query: 145 ARYQKSYR 122
           AR QKSYR
Sbjct: 133 ARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 38/114 (33%), Positives = 53/114 (46%)
 Frame = -3

Query: 478 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQA 299
           G G   VNG P D+   R++  K      L    + +  ++  TV GGG   Q  A+  A
Sbjct: 26  GTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAA 84

Query: 298 ISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 137
           ISK+LI      + E S K+     V  D   ++ D R+ E KK G P AR +Y
Sbjct: 85  ISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTGQPKARKKY 127


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 311 YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 222
           Y   YF G D   PE C        QRH S
Sbjct: 42  YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 141 DTRNLTVKPSRKPSGGIVAASCCH 70
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,727
Number of Sequences: 5004
Number of extensions: 36116
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)