Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F07f
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          195   2e-50
11_01_0155 - 1287003-1287452                                          195   2e-50
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    33   0.17 
11_06_0598 - 25391923-25393197                                         28   5.0  
11_01_0523 - 4109070-4109984,4110532-4110936                           28   5.0  
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    28   5.0  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  195 bits (475), Expect = 2e-50
 Identities = 85/128 (66%), Positives = 109/128 (85%)
 Frame = -3

Query: 505 AXAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHV 326
           A AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F  +D+R+ V+GGG  
Sbjct: 22  AVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKT 81

Query: 325 AQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGAR 146
           +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GAR
Sbjct: 82  SQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGAR 141

Query: 145 ARYQKSYR 122
           AR+QKSYR
Sbjct: 142 ARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  195 bits (475), Expect = 2e-50
 Identities = 85/128 (66%), Positives = 109/128 (85%)
 Frame = -3

Query: 505 AXAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHV 326
           A AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F  +D+R+ V+GGG  
Sbjct: 22  AVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKT 81

Query: 325 AQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGAR 146
           +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GAR
Sbjct: 82  SQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGAR 141

Query: 145 ARYQKSYR 122
           AR+QKSYR
Sbjct: 142 ARFQKSYR 149


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -3

Query: 499 AVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQ 320
           A  + + G G   VN +  D   P +L ++          +     D+  TVKGGG   Q
Sbjct: 302 ARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVKGGGVSGQ 360

Query: 319 VYAIRQAISKAL 284
           V AIR  IS+AL
Sbjct: 361 VGAIRLGISRAL 372


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 141 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 293
           LA    PP  L S      TS L  + T +  ++    S+TY    AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304


>11_01_0523 - 4109070-4109984,4110532-4110936
          Length = 439

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 340 GGGHVAQVYAIRQAISKALIAFY 272
           GGG    V  +++A++KAL+AFY
Sbjct: 48  GGGGFFDVGRLKEALAKALVAFY 70


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 457 NGRPLDLVEPRLLQYKLQEPILLL 386
           NG PLD V+P+L ++  +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,652
Number of Sequences: 37544
Number of extensions: 274027
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)