Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F07f
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   203   7e-53
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    28   3.4  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    28   3.4  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   4.5  
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    28   4.5  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    28   4.5  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   4.5  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical...    28   4.5  
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  203 bits (495), Expect = 7e-53
 Identities = 89/128 (69%), Positives = 113/128 (88%)
 Frame = -3

Query: 505 AXAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHV 326
           A AVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  VDIR+ V GGGHV
Sbjct: 17  ATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHV 76

Query: 325 AQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGAR 146
           AQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR E KKFGGPGAR
Sbjct: 77  AQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGAR 136

Query: 145 ARYQKSYR 122
           ARYQKSYR
Sbjct: 137 ARYQKSYR 144


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 265 YVDEASKKEIKDILVQYDRSLLVADPRRCE 176
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 326 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLA 487
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTA 201


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 326 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLA 487
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTA 201


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 332 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 430
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 392 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 273
           FAR    +Y       + WW+ S    Y  ++ KG+D LL
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 438


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 392 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 273
           FAR    +Y       + WW+ S    Y  ++ KG+D LL
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 701


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +2

Query: 332 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 430
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 205 LLVADPRRCEPKKFGGPGARARY 137
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical
           protein Y37A1B.9 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 386 RQGKILYG*HQSDSQ---GWWSCSTSLRYQTSYFKGSDRLLPEIC 261
           R+ +I+   H +      GW S    L Y+T+Y    + L P+ C
Sbjct: 259 RENEIIINIHDNPEMTRLGWTSLEYKLGYRTTYIMNLENLHPDFC 303


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -3

Query: 337 GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPK 170
           GG VA + +    ++  L + +Q+Y+  +S      + +Q +R+   A+   C PK
Sbjct: 129 GGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTYRFAEHANCLPK 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,257,174
Number of Sequences: 27780
Number of extensions: 212073
Number of successful extensions: 541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)