Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   4.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 508 PDIGSRRVTLSVSSFLRSMSEVS 440
           PD G    T+ V   +RSM  +S
Sbjct: 23  PDFGGPPATVEVDIMVRSMGPIS 45


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 9   CFIRKFIIYFSSMFLNHTQIDYTRNIVLSERIINK 113
           C I+KF  Y      N   +     I L E  +NK
Sbjct: 65  CLIKKFNAYDDGGNFNEVVVREIAEIYLDENEVNK 99


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 335 YNQKIYFKYTVVN 297
           YN+K+Y+K  ++N
Sbjct: 100 YNKKLYYKNYIIN 112


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 335 YNQKIYFKYTVVN 297
           YN+K+Y+K  ++N
Sbjct: 111 YNKKLYYKNYIIN 123


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 335 YNQKIYFKYTVVN 297
           YN+K+Y+K  ++N
Sbjct: 341 YNKKLYYKNYIIN 353


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 335 YNQKIYFKYTVVN 297
           YN+K+Y+K  ++N
Sbjct: 336 YNKKLYYKNYIIN 348


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 282 TKFDSINNCVFE 317
           TK  SIN C+F+
Sbjct: 228 TKMSSINPCIFD 239


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 115 FLFIIRSDNTMLRV*SICV 59
           FLF+I + ++  R+ +ICV
Sbjct: 20  FLFVIAAQDSSGRIFTICV 38


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 115 FLFIIRSDNTMLRV*SICV 59
           FLF+I + ++  R+ +ICV
Sbjct: 20  FLFVIAAQDSSGRIFTICV 38


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 115 FLFIIRSDNTMLRV*SICV 59
           FLF+I + ++  R+ +ICV
Sbjct: 20  FLFVIAAQDSSGRIFTICV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,418
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)