Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   0.73 
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    28   0.97 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   3.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.2  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.0  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 137 RPFIISVRTFLILLFFKGFYDLVTESFKSCLILI 36
           +P+I++++     L   G Y+  TE  KSCL L+
Sbjct: 798 KPYILALKESADALMQFGSYEYATELLKSCLFLL 831


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +1

Query: 376 CFI*WFGL*IKC-FKTISSSQ----YAYKYYKLVIFANSNVRNPVSINRYWG 516
           C + WF +     F+   + Q    Y  KYYK   F  +N+R P+ +   WG
Sbjct: 337 CLVHWFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFPTNNIRTPIYL--IWG 386


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +3

Query: 63  LSYQVIKTLKK**YQKRPY*NNERPLIPAY-----LRLHSKSNQSNKYVPKMGDTINNKL 227
           L Y+V+KT            + ER LIP +     L L  K N   +Y P     +N+KL
Sbjct: 154 LDYEVVKTSATGIPYAVVVTSFERDLIPFHELYYKLALEGKCNYVIRYSPPSSSKLNSKL 213

Query: 228 YL 233
           Y+
Sbjct: 214 YV 215


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 171 FYYEASDTRV*EAVHYFSKDVSDIII 94
           F+YEAS   V E VH F K+ ++I I
Sbjct: 167 FFYEASHPDVLEWVHSFFKENTEIRI 192


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/62 (17%), Positives = 31/62 (50%)
 Frame = -1

Query: 200 FRHIFVALVAFTMKPQIRGYKRPFIISVRTFLILLFFKGFYDLVTESFKSCLILIYIHIF 21
           F +    ++++ + P ++GY      + R+ L   F+K     +  +F +C+++ Y+   
Sbjct: 122 FLYWLTFVLSWIILPFVQGYMESKFSTPRSRLSDSFYKNLRYYLLLTFLTCVVIAYLRFA 181

Query: 20  MK 15
           ++
Sbjct: 182 LR 183


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 250  ITVTNTKDAPTTGVN*CPNLTGGIVAKSEHCGLAPRP 360
            IT T T + P+TG    P+  G   A     G  P P
Sbjct: 1042 ITNTATNNPPSTGFTFTPSNAGSTAAPMFGAGNTPNP 1078


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,885
Number of Sequences: 5004
Number of extensions: 43312
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)