Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    29   2.7  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    29   2.7  
AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical...    28   4.7  
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 296 QLTPVVGASFVLVTVINKISR*IQFIIYCVPHFRHIFVALVAFTM 162
           Q+  + G   +L  V+N  +   +  +Y  P+ +H+FV ++AF++
Sbjct: 227 QMKTIEGYEELLCDVVNICAHMYEHQLYLSPNEKHMFVKVIAFSL 271


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 296 QLTPVVGASFVLVTVINKISR*IQFIIYCVPHFRHIFVALVAFTM 162
           Q+  + G   +L  V+N  +   +  +Y  P+ +H+FV ++AF++
Sbjct: 227 QMKTIEGYEELLCDVVNICAHMYEHQLYLSPNEKHMFVKVIAFSL 271


>AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6a protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 TMKPQIRGYKRPFIISVRTFLILLFFKGFYDLVTESFKSCLILIYIHIF--MKNYI 6
           T++  I  +  PF + V  FL+    +G  +L T  F+ C+   ++ I+  + NY+
Sbjct: 28  TVQFSIFCFTLPFYVFVTYFLLDALHRGIDELSTPFFRLCITTAFLDIWTLLNNYL 83


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = +1

Query: 52  DLKLSVTRS*KPLKNNNIRNVLTEIMNGLLYPRI*GFIVKATKATNMCLKWGTQ*IINCI 231
           +L +SV+RS           V T   +GL+Y    G +V A     +   W      +CI
Sbjct: 772 ELSISVSRSGNVTTTTEFAIVATSSYSGLVYTV--GTLVIAVILVTITFLWCWY-DQSCI 828

Query: 232 YRDILFITVTNTKDAPTTG 288
           Y  +    +TN K AP  G
Sbjct: 829 YHKLKRRYITNMKTAPELG 847


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,661,477
Number of Sequences: 27780
Number of extensions: 239571
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)