Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F04f
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.13 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.23 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   2.1  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   6.5  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   8.5  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   8.5  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 185 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 286
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 109 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNRII 5
           Y    ES + D+ +  SH+ A +I Q  R+G R++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 263 FPCVPTQSFVDPIHLKICQYPHGGL 189
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 23/93 (24%), Positives = 43/93 (46%)
 Frame = +3

Query: 186 SESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALR 365
           S +++R  A  + + +  +L  N G+W   TW  +  R W  DV +  ++  +   + LR
Sbjct: 160 SPASLRETAAKEYDALTSKLG-NTGDWIYDTWSDNELRTWLHDVGVPISSHESTRSHLLR 218

Query: 366 ARVSNNGSVSWIKRLDISTPNFYAVRQLAQRHA 464
            ++ N  S     + D + P+  AV+  A   A
Sbjct: 219 -KLKNYIST----KADEAQPSVEAVKGKASEKA 246


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 12  LLPFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVN 149
           L+     C I     C  A  L  + DSL+  Y+  SP   K V+N
Sbjct: 371 LISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 425 WSANVQALYPGDGAVIRYTGAESVVPGGGCS 333
           W A + A    DGAV  Y      V GGG S
Sbjct: 135 WQAGISACAVCDGAVPIYRNKPLAVVGGGDS 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,860
Number of Sequences: 5004
Number of extensions: 43042
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)