Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   3.0  
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    29   3.0  
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    27   6.9  
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628...    27   9.1  
09_03_0081 + 12163213-12164088                                         27   9.1  
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           27   9.1  

>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 50  TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEED 154
           T +L+K+ DEY + ++S  + TE   K  ++FEE+
Sbjct: 477 TAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEE 511


>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 386 RHNYVYLASILYISPF*LFCKTNFSFHISHRLPFELQKRVAVTL 517
           RH  + LA  LY + F L+CK      +  R+P  + KR   TL
Sbjct: 256 RHALLILADHLYYNKFELYCKPVTGITVGTRVPGFIPKRENDTL 299


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 325 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVGG 224
           L+D+           +HL   +FPDV  FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531


>10_08_0308 +
           16660751-16661450,16661656-16661819,16662615-16662800,
           16663297-16663533
          Length = 428

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 1   HRRGSDHPQSRQRCHPDRGAP 63
           HRRG      RQRC   RGAP
Sbjct: 87  HRRGPSLVPGRQRCGGARGAP 107


>09_03_0081 + 12163213-12164088
          Length = 291

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 175 EIRMHIRRQHPQASPEGPR 231
           + R+H++RQ  QA P GPR
Sbjct: 66  QARLHLQRQAAQAGPLGPR 84


>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -2

Query: 223 LLDLLEGVAFECAYGFHL--STVSAVLFELFA 134
           L+D+L G+  +  +GFHL  S + A++ ++FA
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFA 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,216
Number of Sequences: 37544
Number of extensions: 255975
Number of successful extensions: 731
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)