Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325F03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 73 9e-14
Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical pr... 72 3e-13
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 68 4e-12
AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding... 66 2e-11
AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding... 66 2e-11
Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical pr... 58 3e-09
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 30 1.2
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 30 1.2
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81127-9|CAB03394.3| 735|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81056-11|CAB02911.3| 735|Caenorhabditis elegans Hypothetical p... 29 1.5
U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine rece... 29 2.0
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 29 2.0
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 6.2
AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical... 27 6.2
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 73.3 bits (172), Expect = 9e-14
Identities = 36/74 (48%), Positives = 47/74 (63%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKS 181
+GVGLITRKAA + PT+E++ +GD + STFK T + FK G+EF+E DG VKS
Sbjct: 24 VGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFKLGQEFDETTPDGRTVKS 83
Query: 182 VCTFEGNTLKQVQK 223
V FE +QK
Sbjct: 84 VVNFENGKFIHIQK 97
>Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical
protein T22G5.2 protein.
Length = 137
Score = 71.7 bits (168), Expect = 3e-13
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKS 181
IGVGLITRKAA + P +E+R DG+ +N STFK T++ FK GEEF E+ D S
Sbjct: 26 IGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTKLSFKLGEEFVENSPDDRTYNS 85
Query: 182 VCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT--AKDVTCTRVYK 325
+ TFE L Q + V E K + T + DV C R ++
Sbjct: 86 LFTFENGKLTHRQNKIKENHKSSVLTTWLENGKLIQTYQSGDVICRREWE 135
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 68.1 bits (159), Expect = 4e-12
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKS 181
+GVGL+ RKAA A PT+E++ +G+++++ STFK T ++F G EF+E DG + KS
Sbjct: 25 VGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTLEFTLGVEFDETTPDGRQFKS 84
Query: 182 VCTFEGNTLKQVQK--APDGLEVTYVREFGPEEMKAVMTAKDVTCTRVY 322
T E + VQK + R F E++ + + V R Y
Sbjct: 85 TITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTLQSGSVISRRAY 133
>AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding
protein protein 9,isoform b protein.
Length = 137
Score = 65.7 bits (153), Expect = 2e-11
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKS 181
+GVG R A P +E +GDE+ + ++STFK +K+K G +E ADG V S
Sbjct: 26 VGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKTADGRDVSS 85
Query: 182 VCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 325
V + E + L Q++ G + + + + ++ V T V CTRVY+
Sbjct: 86 VFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 134
>AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding
protein protein 9,isoform a protein.
Length = 152
Score = 65.7 bits (153), Expect = 2e-11
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKS 181
+GVG R A P +E +GDE+ + ++STFK +K+K G +E ADG V S
Sbjct: 41 VGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKTADGRDVSS 100
Query: 182 VCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 325
V + E + L Q++ G + + + + ++ V T V CTRVY+
Sbjct: 101 VFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 149
>Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical
protein T22G5.6 protein.
Length = 137
Score = 58.4 bits (135), Expect = 3e-09
Identities = 28/65 (43%), Positives = 41/65 (63%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKS 181
IGVGL+ RKAA+ +PT+E++ DGD ++ STFK ++ FK E+F E D +
Sbjct: 26 IGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNKLAFKIREKFVEIAPDERSYNT 85
Query: 182 VCTFE 196
+ TFE
Sbjct: 86 LVTFE 90
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 133
IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 133
IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 133
IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>Z81127-9|CAB03394.3| 735|Caenorhabditis elegans Hypothetical
protein F09F3.9 protein.
Length = 735
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 134 GEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCT 313
G E DGA++ +C N KQ+ K+P E + +++K++ A+ +
Sbjct: 433 GATGEHSPCDGAELDHLCENFLNIDKQILKSPSKEEQLEIATVTEQDLKSLKLAEKLD-- 490
Query: 314 RVYKVQ*GLYSEVGSRC-----RRFTNIPRHNYVYL 406
+++ G+ SE+ RC + F ++ H+ V+L
Sbjct: 491 --FEIVDGMESEI-ERCYEAHTKSFNDLHMHSMVFL 523
>Z81056-11|CAB02911.3| 735|Caenorhabditis elegans Hypothetical
protein F09F3.9 protein.
Length = 735
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 134 GEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCT 313
G E DGA++ +C N KQ+ K+P E + +++K++ A+ +
Sbjct: 433 GATGEHSPCDGAELDHLCENFLNIDKQILKSPSKEEQLEIATVTEQDLKSLKLAEKLD-- 490
Query: 314 RVYKVQ*GLYSEVGSRC-----RRFTNIPRHNYVYL 406
+++ G+ SE+ RC + F ++ H+ V+L
Sbjct: 491 --FEIVDGMESEI-ERCYEAHTKSFNDLHMHSMVFL 523
>U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform c protein.
Length = 299
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 366 ADSRTSRGTIMFI*HLFYTLALSSFFVKLILVFTSVIVYRSNC 494
ADS + G I+F HLF+ + S F L+ + T + V +C
Sbjct: 51 ADSLHNYGQIIFTAHLFFDIQTSHFVCTLLNIPTLIGVISGSC 93
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 23 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 151
+ A + TP D+ + T++T TTE K KP E+ EE
Sbjct: 296 KPAESTETPAAGTEPSTDDGAIETTTTTTTTENKEKPEEKMEE 338
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +2
Query: 14 LITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTF 193
+IT+ ++ V+ +EL+ +EY L+ F + K ++ +E A K+ F
Sbjct: 230 IITQISSLVVSKFIELKVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAKYQKMYCSALF 289
Query: 194 EGNTLKQVQKAPDGLE 241
+K + AP LE
Sbjct: 290 NYCQIKYKKAAPARLE 305
>AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical
protein F16B4.11 protein.
Length = 440
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 2 IGVGLITRKAANAVTPTVELRKDGDEYNL 88
+ + L+ KA N + V +RKDGD NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,110,106
Number of Sequences: 27780
Number of extensions: 206150
Number of successful extensions: 576
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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