Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    29   0.42 

>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
 Frame = +3

Query: 69  LTCYLSKMSFRRVL*LPMEYKVNNSFF*FTNNCPKVTLP---ALIIVDSYVGA*EHRHLV 239
           +T Y S  S R  L L MEY     FF   ++ PK  LP   A         A E+ HL+
Sbjct: 216 VTLYHSFQS-RDYLYLCMEYCAGGEFFRALHSLPKHILPEKDACFYAAEVTAALEYLHLM 274

Query: 240 YFL-REQSTK*V------HYIIGKYKISNLLLIYTHPAL 335
            F+ R+   + +      H ++  + +S  + I THP +
Sbjct: 275 GFIYRDLKPENILLHQSGHIMLSDFDLSKPISIVTHPTV 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,278
Number of Sequences: 5004
Number of extensions: 40129
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)