Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    27   1.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   3.9  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   5.2  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   6.8  

>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 339 RITCWSWGTDYFKGEVVYKR 280
           R+  W W  DY +G+VV  R
Sbjct: 62  RVLLWKWNKDYKRGDVVILR 81


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 327  WSWGTDYFKGEVVYKRVETPTVNVCTTAVPPSVVAI 220
            W    + F G+V+++       NV  T +PP V+ I
Sbjct: 983  WYAFCNAFSGQVIFESWSISLYNVLFTVLPPVVIGI 1018


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 352 LRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPHNP-VTVTRTMVDW 513
           LRP+    + LRNV  R  + E +++ +++ R    ++ RP++P +T+    + W
Sbjct: 21  LRPA--GRSTLRNVWRRSIATEHLTQTEANSRLASQRVHRPNSPHLTIYEPQLTW 73


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 55  PSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLS 162
           PS+ + E  +C+ + TGH+  +++    P  K ++S
Sbjct: 495 PSM-YKEGGICKQTFTGHKDFILSVTVSPDGKWIIS 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,505
Number of Sequences: 5004
Number of extensions: 46188
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)