Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    41   6e-04
Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z54235-2|CAA90972.2|  371|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    29   2.7  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    29   2.7  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF016684-10|AAB66205.1|  340|Caenorhabditis elegans Hypothetical...    28   4.7  
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin...    27   6.2  
Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A recept...    27   8.1  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
 Frame = +1

Query: 121 IASVYLPP-----DKPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCRRT-NVNGRRLDA 282
           I++VY+PP     +   L +D  ++F      I++GD+N HH+ W+   + +  GR L  
Sbjct: 3   ISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAE 62

Query: 283 FID---DLTFEIVGPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPV 453
            ID   DL  +     T     Y+I+    TI  A L            + +L SDH P+
Sbjct: 63  LIDLHPDLIIQNEQVHT-RADTYSISSPDITICTADLATKC----HWSTLYKLGSDHIPM 117

Query: 454 VMQLGRPHNPVTVTRTMVDWNK 519
            +++ +   P    R + ++ K
Sbjct: 118 KLKINQAATPKRPKRLVANFKK 139


>Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical
           protein H25K10.5 protein.
          Length = 516

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 426 RARLRPPTCRYAARSPSQPSHCYEDHGGL 512
           R  L+  TCRY +  P QP++C    GGL
Sbjct: 195 RGNLKDCTCRYNSSEPQQPTNCKALKGGL 223


>Z54235-2|CAA90972.2|  371|Caenorhabditis elegans Hypothetical
           protein C09G9.2 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 190 GDSVILAGDLNCHHTRWNCRRTNVNGRRLD 279
           G +V++AGD N   T W+ R  N +   LD
Sbjct: 179 GTNVVMAGDANGQITMWDLRENNEHSNTLD 208


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 410 PSKQCQSSTQTTDLSLCSSVALTTQSLLRG 499
           P+KQC SS  T   + C   A  TQ ++ G
Sbjct: 211 PAKQCASSCNTQCTNACQQTAQATQQVIYG 240


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 410 PSKQCQSSTQTTDLSLCSSVALTTQSLLRG 499
           P+KQC SS  T   + C   A  TQ ++ G
Sbjct: 211 PAKQCASSCNTQCTNACQQTAQATQQVIYG 240


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
 Frame = +1

Query: 1   GGTAIYYRRALHVVPLDTPSLSHIEASVCRI----------SLTGHQPIVIASVYLPP-- 144
           GG A+ ++ +L++   D    +H     C I          + +   P+ I  +Y PP  
Sbjct: 387 GGVAVMHKSSLNITLRDINFETHYPKHRCEILAFDIHNAEPASSASSPLSIFLIYRPPCC 446

Query: 145 ---DKPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCRRTNVN 264
              +   L + +ES   +  + ILAGDLN     W+   ++++
Sbjct: 447 SVSENAALIAHLESYIPLSRT-ILAGDLNFPQINWSSANSSLH 488


>AF016684-10|AAB66205.1|  340|Caenorhabditis elegans Hypothetical
           protein F45C12.6 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 26/105 (24%), Positives = 40/105 (38%)
 Frame = +1

Query: 67  HIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLFGMGDSVILAGDLNCHHTRWNC 246
           H+  +  R SLT H+   +  +Y     P   SD   L G     +    L+CH T +  
Sbjct: 106 HVMYTSYRYSLTIHRSHCLHRLYEKMFSPSEQSDAVLLVGDKKLHVNKAFLSCHSTYF-- 163

Query: 247 RRTNVNGRRLDAFIDDLTFEIVGPPTPTCYPYNIALRPSTIDLAL 381
           R            I+ +T++  G    T YP  +     T +L L
Sbjct: 164 RSLFAKQADTGILIEGVTYDEFGLLMSTIYPEMVLSTDKTAELLL 208


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 453 RYAARSPSQPSHCYEDHGGLE 515
           RY  + P  P +C ED GG+E
Sbjct: 6   RYGFQQPPPPPNCCEDGGGIE 26


>AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin
           protein 70 protein.
          Length = 466

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 208 AGDLNCHHTRWNCRRTNVNGRR--LDAFIDDLTFEIV 312
           +G L+ H   WN   TN NG+R  LDA    +T E V
Sbjct: 403 SGKLDMHPETWNNPYTNANGKRANLDASGFAMTVEYV 439


>Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.1 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 340 YNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDH 444
           Y+I LRP     ALL  + + + S +++SE+D D+
Sbjct: 65  YDIRLRPGFGGDALLLTMDIIIASFDSISEVDMDY 99


>AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A receptor
           subunit protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 340 YNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDH 444
           Y+I LRP     ALL  + + + S +++SE+D D+
Sbjct: 65  YDIRLRPGFGGDALLLTMDIIIASFDSISEVDMDY 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,017
Number of Sequences: 27780
Number of extensions: 296138
Number of successful extensions: 877
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)