Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.20 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.47 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 340 YNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDH 444
           Y+I LRP+     LL  + L + S +A+SE++ D+
Sbjct: 48  YDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDY 82


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
 Frame = +1

Query: 214 DLNCHHTRWNCRRTNVNGRRLDAF--------IDDLTFEIVGPPTPTCYPYNIALRPSTI 369
           DL+C   + N R   + G+  DA           +LTFE    P      +NI+     +
Sbjct: 79  DLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKEL 138

Query: 370 DLALLRNVTLRLRSIEAMSELDSDHRP--------VVMQLGRPHNPV-TVTRTMV 507
            +++++ V+  L  ++ + E + D  P        VV  +  P  PV TVT   V
Sbjct: 139 GISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACV 193


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 76  ASVCRISLTGHQPIVIASVYLPP-DKPLL 159
           ASV   +LTG  P ++    LPP + PL+
Sbjct: 469 ASVVAAALTGTYPTLLPQWCLPPREAPLV 497


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 408 TQAQS-YVPKQCQVYSARTERDVIR 337
           T A+S ++P++ ++YS  T +DV R
Sbjct: 661 TPAESTFIPEERRIYSPITFQDVAR 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,030
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)