Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E06f
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    27   5.7  
09_06_0146 + 21186889-21187178,21187321-21187435,21188595-211886...    26   7.6  

>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 134 DNRRLKCVK*LGAVRNIKGNERMLVPKSGGQVDC 235
           D+  LKC+  L  V  +   +RML  ++ G  +C
Sbjct: 203 DSGELKCINLLIKVGAVVSEDRMLTAENSGSTEC 236


>09_06_0146 +
           21186889-21187178,21187321-21187435,21188595-21188686,
           21188839-21188952,21189139-21189193,21189348-21189458,
           21190226-21190279,21190362-21190537,21190623-21190730,
           21191332-21191405,21191500-21191675,21192169-21192264,
           21192534-21192614,21192713-21192766,21193246-21193380,
           21193453-21193533
          Length = 603

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 ISKVMKECWYQNPAXRLTALRIKKTL 257
           +S+++++CW Q PA R     I +TL
Sbjct: 546 LSELLQKCWQQEPAERPDFSEILETL 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,202,813
Number of Sequences: 37544
Number of extensions: 141780
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)