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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...   184   5e-47
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...   184   5e-47
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...   184   5e-47
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.       184   5e-47
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.       184   5e-47
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.       184   5e-47
U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4...   184   5e-47
U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4...   184   5e-47
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...   184   5e-47
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.       177   3e-45
Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...   175   1e-44
AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    99   1e-21
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    99   2e-21
Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical pr...    77   1e-14
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    65   3e-11
U40799-8|AAA81487.1|  552|Caenorhabditis elegans Hypothetical pr...    62   2e-10
Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical pr...    40   8e-04
U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related p...    40   8e-04
U42436-1|AAF99891.1|  305|Caenorhabditis elegans Hypothetical pr...    37   0.008
U40426-4|AAP40527.1|  144|Caenorhabditis elegans Diacylglycerol ...    31   0.38 
U40426-3|AAP40528.1|  351|Caenorhabditis elegans Diacylglycerol ...    31   0.38 
U40426-2|AAP40526.1|  536|Caenorhabditis elegans Diacylglycerol ...    31   0.38 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical pr...    28   4.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   4.7  
AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical ...    28   4.7  

>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 STFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 STFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 STFQQMWISKQEYDESGPSIVHRKCF 376


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 STFQQMWISKQEYDESGPSIVHRKCF 376


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 STFQQMWISKQEYDESGPSIVHRKCF 376


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 STFQQMWISKQEYDESGPSIVHRKCF 376


>U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4,
           isoform b protein.
          Length = 332

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 247 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 306

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 307 STFQQMWISKQEYDESGPSIVHRKCF 332


>U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4,
           isoform c protein.
          Length = 362

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 277 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 336

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 STFQQMWISKQEYDESGPSIVHRKCF 362


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score =  184 bits (447), Expect = 5e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 350

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 351 STFQQMWISKQEYDESGPSIVHRKCF 376


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score =  177 bits (432), Expect = 3e-45
 Identities = 85/86 (98%), Positives = 85/86 (98%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGTTMYPGIADRMQKEITALAP TMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 291 RKDLYANTVLSGGTTMYPGIADRMQKEITALAP-TMKIKIIAPPERKYSVWIGGSILASL 349

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 350 STFQQMWISKQEYDESGPSIVHRKCF 375


>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score =  175 bits (427), Expect = 1e-44
 Identities = 82/86 (95%), Positives = 84/86 (97%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           RKDLYANTVLSGGT+M+PGIADRMQKEI  LAPSTMKIKIIAPPERKYSVWIGGSILASL
Sbjct: 290 RKDLYANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASL 349

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
           STFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 350 STFQQMWISKQEYDESGPSIVHRKCF 375


>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score =   99 bits (238), Expect = 1e-21
 Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSIL 351
           R  L++N  ++GG ++  G  +R+   +    P T+K+++ A P   ERKY  WIGGSIL
Sbjct: 348 RPTLFSNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSIL 407

Query: 350 ASLSTFQQMWISKQEYDESGPSIVHRKC 267
            SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 408 GSLGTFQQMWVSKAEYDESGKSIVEKKC 435


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 43/86 (50%), Positives = 62/86 (72%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           R+ LY+N VLSGGTT++ G  DR+  E+  +AP+  KI+I A  ER    WIGGSI+ASL
Sbjct: 289 RQTLYSNIVLSGGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVASL 348

Query: 341 STFQQMWISKQEYDESGPSIVHRKCF 264
            TF++MW+ K+EY++ G S +H++ F
Sbjct: 349 DTFRKMWLGKKEYEDMGASAMHKRFF 374


>Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical
           protein K07C5.1 protein.
          Length = 395

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 13/90 (14%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITAL-----------APSTMKIKIIAPPERKYS 375
           R D Y + VLSGGTTMYPG+  R++KE+  L           A    KI+I APP RK+ 
Sbjct: 294 RLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHM 353

Query: 374 VWIGGSILASL--STFQQMWISKQEYDESG 291
           V++GG++LA+L     Q  W+SK+EY+E G
Sbjct: 354 VFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 16/96 (16%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALA----------------PSTMKIKIIAPP 390
           R+ LY N VLSGG+TM+   A ++Q+++  L+                P  + +++I+  
Sbjct: 319 RRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHK 378

Query: 389 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 282
            ++Y+VW GGS+LAS S F Q+  +K EY E GPSI
Sbjct: 379 MQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414


>U40799-8|AAA81487.1|  552|Caenorhabditis elegans Hypothetical
           protein F42C5.9 protein.
          Length = 552

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 26/72 (36%), Positives = 48/72 (66%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 342
           R+ LY N  L+GG ++ PGIA+++++E++ + P+T+  ++   P R  + ++G  I+AS 
Sbjct: 468 RRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASA 527

Query: 341 STFQQMWISKQE 306
           STF+   IS Q+
Sbjct: 528 STFEDSCISLQQ 539


>Z46676-5|CAA86667.3|  418|Caenorhabditis elegans Hypothetical
           protein C08B11.6 protein.
          Length = 418

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSIL 351
           R  L  N ++ GG++ +PG  +R+++E+ ++ P+   + +   +  P+     W  G  L
Sbjct: 305 RPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL 362

Query: 350 ASLSTFQQMWISKQEYDESGPSIVHRKCF*T 258
             L+  +  WI+++++DE G S+     F T
Sbjct: 363 --LTASKVPWINRKDWDERGDSLEFSNFFQT 391


>U24189-2|AAC47513.1|  418|Caenorhabditis elegans actin-related
           protein-like protein.
          Length = 418

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSIL 351
           R  L  N ++ GG++ +PG  +R+++E+ ++ P+   + +   +  P+     W  G  L
Sbjct: 305 RPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL 362

Query: 350 ASLSTFQQMWISKQEYDESGPSIVHRKCF*T 258
             L+  +  WI+++++DE G S+     F T
Sbjct: 363 --LTASKVPWINRKDWDERGDSLEFSNFFQT 391


>U42436-1|AAF99891.1|  305|Caenorhabditis elegans Hypothetical
           protein C49H3.8 protein.
          Length = 305

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
 Frame = -1

Query: 521 RKDLYANTVLSGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK----YSVW 369
           RK L+ N +L+GG +  PG+  R+++EI  +   +  KI +I       E K    +  W
Sbjct: 206 RKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIKNTPLFVSW 265

Query: 368 IGGSILASL-STFQQMWISKQEY 303
           +G S+L SL  T ++  ++ +E+
Sbjct: 266 LGASLLGSLRETIERKSLTLEEW 288


>U40426-4|AAP40527.1|  144|Caenorhabditis elegans Diacylglycerol
           kinase protein 2,isoform b protein.
          Length = 144

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 PYGVLPLWRSNDLNLHCRWGESCD 440
           P  VLPL   NDL+   +WG+ CD
Sbjct: 97  PVAVLPLGTGNDLSRLLKWGKKCD 120


>U40426-3|AAP40528.1|  351|Caenorhabditis elegans Diacylglycerol
           kinase protein 2,isoform c protein.
          Length = 351

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 PYGVLPLWRSNDLNLHCRWGESCD 440
           P  VLPL   NDL+   +WG+ CD
Sbjct: 97  PVAVLPLGTGNDLSRLLKWGKKCD 120


>U40426-2|AAP40526.1|  536|Caenorhabditis elegans Diacylglycerol
           kinase protein 2,isoform a protein.
          Length = 536

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 PYGVLPLWRSNDLNLHCRWGESCD 440
           P  VLPL   NDL+   +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 205  KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 297
            +P  + R  A GG DA+C+ K + C  E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653


>U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical
           protein F35D2.3 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 308 EYDESGPSIVHRKCF*THRASLPPAARGRLLNSG 207
           +Y ++G SIV+ KC  T R   P   R R LN G
Sbjct: 30  DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 205  KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 297
            +P  + R  A GG DA+C+ K + C  E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653


>AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical
           protein Y52B11A.9 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 389 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THRASLPPAAR 228
           +RK  V   G   A +S F    + K++ DE GPS   RK       S  PAA+
Sbjct: 213 DRKLDVK-SGVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,101,328
Number of Sequences: 27780
Number of extensions: 218117
Number of successful extensions: 681
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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