Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325E03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 41 1e-04
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 34 0.015
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 29 0.56
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.56
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 3.0
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 3.9
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.9
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 25 5.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 5.2
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 6.8
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.0
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 40.7 bits (91), Expect = 1e-04
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +3
Query: 204 TETYNGVKQYKQVRYYGNEAYLRHTQHLVANNGQIQLPAGPQSLPFRFQIPHTAPSTVAG 383
T ++ G+K++ R E + H + NN +++ + +P P T+
Sbjct: 46 TASFTGLKKFPTERQLPLECHFNHIDWDLGNNFKVKEGVF-YTFDIIAPLPRCTPRTIVT 104
Query: 384 ERGNINYKITARLIQANNSAEELGTIFEVVAPFDLN 491
+ G+I+YK+T +L ++ VV PF LN
Sbjct: 105 QEGSISYKLTVKLYTEDDCRMPKSANVPVVVPFTLN 140
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 33.9 bits (74), Expect = 0.015
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +3
Query: 102 VTGSVNFTLDRPITVQALFVEATGEAVVEWIEKETETYNGVKQYKQ--VRYYGNEAYLRH 275
++GSV L+ I+V+A+ ++ G+ + W E G + KQ V Y N ++ +
Sbjct: 39 LSGSVVLCLNEAISVKAISLKLVGKCRISWSEPSPTVRGGQRHNKQEYVVYEKNWIFVPY 98
Query: 276 TQHLVANNGQIQLPAGPQSLPFRFQIPHTAPSTVAG 383
T AN L AG PF +P +V G
Sbjct: 99 TG---ANR---TLRAGNYEYPFHVMLPGDIAESVEG 128
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 360 TAPSTVAGERGNINYK 407
TAPST ERGN+NY+
Sbjct: 493 TAPSTTIDERGNLNYE 508
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 351 IPHTAPSTVAGERGNINYKITARLIQANNSAEELGTIFEVVAPFDLNLANDT 506
+ H T+ N + T+ +AN++ E EV PFD + AN++
Sbjct: 1008 VQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNEVSQPFDFDTANES 1059
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = +3
Query: 87 YSGQIVTGSVNFTLDRPITVQALFVEATGEAVVEWIEKETE-TYNGVKQYKQVRYYGNEA 263
Y G++ + +D TVQ F EAT + + E I K + Y K+ G E
Sbjct: 653 YGMSPTVGTIAYPIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLEN 712
Query: 264 YL-RHTQHLVANNGQIQLPAGPQSLPFR 344
R Q V +++ GP+ ++
Sbjct: 713 IAQRLLQKEVITYNEVETILGPRPYAYK 740
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 336 PFRFQIPHTAPSTVAGERGNINYKITARLIQANNSAEELGTIF 464
P PH +PS ++ ++ N+ + LIQ N+++++ TIF
Sbjct: 523 PIGHSTPHNSPSLLSVKKRQNNHIRSNTLIQLNSNSKD-STIF 564
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -1
Query: 491 VQIKRSNYFKDCPQFFCR---IISLNKASSNLVIDIASFTCHC 372
+Q +++ P R I +K +S LV +IAS C C
Sbjct: 171 IQTSSQQKYEEIPDIQARRLYFIEADKEASTLVTEIASLACSC 213
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 485 IKRSNYFKDCPQFFCRI 435
++ SN FKD + FCRI
Sbjct: 421 VRMSNEFKDIAELFCRI 437
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 214 YVSVSFSIHSTTASPVASTNKA*TVIGRSNV 122
Y + F++ TTASP+ N IGR NV
Sbjct: 293 YDILPFNVSPTTASPIELLNCHNAPIGRCNV 323
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 48 KGTIKLDSIRNVFYSGQIVTGSVNFT 125
K T+++ + R++F+SGQI+ ++ +T
Sbjct: 269 KTTLEVHTDRSLFFSGQIIDFTICYT 294
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 96 DQNKTHFLLSPTLWCL 49
D N+ F L+P LWCL
Sbjct: 34 DLNRFGFSLNPVLWCL 49
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = -1
Query: 260 LVAIVSNLFVLFNTIICFSFFFDPLYNSFTSCLNKQSLNRNW 135
++ ++ L ++F I CF+FF Y + +++ + R W
Sbjct: 726 VIELICTLLLIFVVIYCFTFFAPMTYGDKSLSVDEWT-RRKW 766
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 208 SVSFSIHSTTASPVASTNKA*TVIGRSN 125
SV+ S STT AST A T+I RS+
Sbjct: 322 SVALSTSSTTTITNASTPAANTIISRSS 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,571
Number of Sequences: 5004
Number of extensions: 40564
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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