Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854...    30   1.3  
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    28   5.2  
06_03_0898 + 25772496-25773501,25774540-25775150                       27   6.9  
03_01_0193 + 1541884-1543064,1543153-1544647                           27   9.1  

>10_08_0001 +
           13984436-13984514,13984804-13984926,13985181-13985468,
           13985560-13985690,13985764-13985979,13986059-13986442
          Length = 406

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = -1

Query: 263 RLVAIVSNLFVLFNTIICFSFFFDPLYNSFTSCLNKQSLNRNWSI*RKIYTSRYNLTRIK 84
           R   +++NLF +     CF  +  P +  F   +  +       + R +YTS Y +  I 
Sbjct: 260 RWTIVMANLFAVIQITGCFQIYCRPTFAQFEQRIQAKDAGYRARMWRLVYTSAY-MVVIT 318

Query: 83  HISY*VQLYGAF 48
            IS  +  +G F
Sbjct: 319 LISAAMPFFGDF 330


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 44  RKRHHKVGLNKKCVLFWSNCNGKCKFYVRSTNYGSSFVC*GNW 172
           R+R   +GL+ + VLF +N +   +F+  +  +G+      NW
Sbjct: 369 RRRFENMGLSMQDVLFLANDDNVARFFDSTLEHGADAKLAANW 411


>06_03_0898 + 25772496-25773501,25774540-25775150
          Length = 538

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 294 NNGQIQLPAGPQSLPFRFQIPHTAPSTVAGERGNINYKITARLIQANNS 440
           N G  +LP GP  LPF   + H A   V   RG + ++  A L + +++
Sbjct: 45  NGGATRLPPGPWRLPFVGSLHHLA---VMRPRGVVVHRALAELARRHDA 90


>03_01_0193 + 1541884-1543064,1543153-1544647
          Length = 891

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 318 LEAEFVHCLRLDVECASNTP 259
           +EAE V  L+L + C SNTP
Sbjct: 852 VEAELVQVLKLGLVCTSNTP 871


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,840
Number of Sequences: 37544
Number of extensions: 228047
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)