Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   2.2  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   6.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   9.0  

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 125 VKRIIHAVRTI----IMSRLCFLRCLLDTHAPIKLPHNVQIIVG 244
           VK  +H   T+    I S L  + CLL + A ++L H VQ +VG
Sbjct: 250 VKHYVHEYPTLDLIYIFSALMSVFCLLLSVASLELLHTVQEVVG 293


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 405 PISYTSSFLRAKPSNPEAFT 346
           P+S  ++FLRA+ S PE+F+
Sbjct: 371 PMSTVNAFLRAEDSIPESFS 390


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 521 SNFLLNV*FCEVVRLFRRWIKFQVYAHDCLIKSQLLIHVQFHTLHLF*EQNHLTQK 354
           SN L+N  F EV+  F  ++K  +Y      K Q  +  Q H +  +  +NH   K
Sbjct: 371 SNLLVN--FDEVIDFFSGFLKACLYLSSNEDKPQEFLKHQIHKVEDYLRKNHKGSK 424


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 155 IIMSRLCFLRCLLDTHAPIKLPHNVQIIVGRNKETKIKDQSC-SRQQLSLKADCE 316
           ++ S+   +    D+H P+K+  + Q  +  +K   ++++S  S Q L L ++ E
Sbjct: 544 VLQSKNILVSSTEDSHEPVKVTEDSQTAIHVSKFEDLENKSMESEQSLQLLSESE 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,120
Number of Sequences: 5004
Number of extensions: 39813
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)