Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325E02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    28   3.5  
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>U97403-9|AAB52469.1|  389|Caenorhabditis elegans Hypothetical
           protein T10E9.1 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -3

Query: 468 VDQIPSICT*LFNKISIVDPCPISYTSSFLRAKPSNPEAFTPSCFIST*HFSQSAFKLSC 289
           +D  P +   L  K  ++  C +  TSS +    S+ + F PS +I   H      KL+ 
Sbjct: 9   LDLPPELLEKLIEKCDLISRCKLRATSSTMNHAVSSTKLFIPSVYIKDLHSVGVLVKLTF 68

Query: 288 CLEHD 274
            L  D
Sbjct: 69  KLFKD 73


>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 125 HSFYEFNFCMAYLTNMVIFFNWYL 54
           H    +  C  +L  +VIFF WYL
Sbjct: 122 HHIKGYKLCFIFLPGVVIFFLWYL 145


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 125 HSFYEFNFCMAYLTNMVIFFNWY 57
           +SF+ F FC+A L  M+   +WY
Sbjct: 375 YSFFHFMFCLASLYVMMTLTSWY 397


>Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical
           protein T23G5.2a protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 110 IHKNYVKRIIHAVRTIIMSRLCFLRCLLDTHAPIKLPHNVQII 238
           +   Y++R +  +  +  SRLC ++  L  H   KLP++  ++
Sbjct: 239 LEAEYIRRFLGQLSPLEESRLCEIKYSLQAHHKGKLPNDAHLL 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,442
Number of Sequences: 27780
Number of extensions: 219418
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)