Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325E01f
(506 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 29 1.9
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 29 1.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 4.5
U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 28 4.5
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 28 4.5
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 28 4.5
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 28 4.5
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 28 4.5
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 28 4.5
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 28 4.5
Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical p... 27 5.9
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 27 5.9
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 27 5.9
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 27 5.9
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 27 5.9
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 27 5.9
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical pr... 27 5.9
AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B... 27 5.9
AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 27 5.9
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 27 7.8
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 27 7.8
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 27 7.8
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 27 7.8
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 27 7.8
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 27 7.8
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 27 7.8
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 27 7.8
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 352 LCSI-AVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRP 459
LCS V CG + T+C C + ST C + RP
Sbjct: 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRP 724
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 352 LCSI-AVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRP 459
LCS V CG + T+C C + ST C + RP
Sbjct: 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRP 724
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = -2
Query: 208 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXHDGAGFG*RQCDGG 41
T+ VS + + G GGC GC G G G G C GG
Sbjct: 14 TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/56 (28%), Positives = 19/56 (33%)
Frame = -2
Query: 208 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXHDGAGFG*RQCDGG 41
T+ VS + + G GGC GC G G G G C GG
Sbjct: 14 TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69
>U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform d protein.
Length = 312
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 438
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 438
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 438
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 438
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 80 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 124
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 438
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 438
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 438
SC+GC + R++ S I Y G C ++++ C C R C
Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133
>Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical
protein T05A10.1k protein.
Length = 582
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
protein T05A10.1i protein.
Length = 1927
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
protein T05A10.1j protein.
Length = 1509
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical
protein T05A10.1b protein.
Length = 725
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261
>AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B
protein.
Length = 692
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261
>AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger
transcription factorSMA-9 protein.
Length = 909
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = -1
Query: 455 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 282
++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ +
Sbjct: 160 QQQAQQQXQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214
Query: 281 LLVWQLERSCMKQGQLPKEQRQQL 210
L QL++ ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 298 VRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLH---RSTLCFCSLHRSTLCFCSIRRPQV- 465
V +C C + R+++S L + Y G CS+ R+ +C HR I ++
Sbjct: 50 VAACHGCKCFFWRTVKSRLNYVCRYGGNCSISTAGRNACRYCRFHRCLFVGMKIEAVKMD 109
Query: 466 KKLNK 480
+KL K
Sbjct: 110 RKLTK 114
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 441
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 47 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 92
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 441
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 441
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 298 VRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLH---RSTLCFCSLHRSTLCFCSIRRPQV- 465
V +C C + R+++S L + Y G CS+ R+ +C HR I ++
Sbjct: 50 VAACHGCKCFFWRTVKSRLNYVCRYGGNCSISTAGRNACRYCRFHRCLFVGMKIEAVKMD 109
Query: 466 KKLNK 480
+KL K
Sbjct: 110 RKLTK 114
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 298 VRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLH---RSTLCFCSLHRSTLCFCSIRRPQV- 465
V +C C + R+++S L + Y G CS+ R+ +C HR I ++
Sbjct: 50 VAACHGCKCFFWRTVKSRLNYVCRYGGNCSISTAGRNACRYCRFHRCLFVGMKIEAVKMD 109
Query: 466 KKLNK 480
+KL K
Sbjct: 110 RKLTK 114
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 310 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 441
SC+GC + R+L + + G C + +S C C R CF
Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -1
Query: 437 HRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQL 303
H ++ ++Q +RVL C++ KP ++++ R P + L
Sbjct: 579 HAMMMAQQQTNRVLICRQCKPPQRLTTARQIKEHRARHLPRKSHL 623
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,005,964
Number of Sequences: 27780
Number of extensions: 131309
Number of successful extensions: 474
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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