Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    29   0.32 
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    29   0.42 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   6.8  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   9.0  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +1

Query: 178  MSDIITSCLQLQKNISTNRIVVKEINGCD-GSFI---VNCVISYCIKQN-SPLLIVSSHN 342
            +S I    +QL+KNI    + V   N  D G ++     C+ ++  K   +PL I     
Sbjct: 1509 ISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSF 1568

Query: 343  SITHYHNVGLRMNHNLFKS 399
            SITH+ ++ L M+  +++S
Sbjct: 1569 SITHFPSLMLAMSKPIYRS 1587


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 149 FYSQMNYYWKRLPT*TNIHFQFK*NTRCAIYLIRNFLLF 33
           F S+  + WK  P    +H+ F  N+    Y  ++FL F
Sbjct: 98  FGSEETFLWKYFPPKKYVHYPFVGNSNFVAYCTKSFLAF 136


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 472 IQHTPLYLLMLRHQNQNNL 416
           +QH PL L  ++H  +NNL
Sbjct: 214 LQHHPLILSTIKHAEENNL 232


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 282 LCYKLLY*AKQPSFDSILT*LNNSLPQCWFKNE 380
           LC +L+   + P FD++   +N  L  C  KN+
Sbjct: 16  LCSQLIENDRIPEFDNLYLDMNGILHNCTHKND 48


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 167 LKAGCLTL*HHVYNCRKIYLP 229
           +K GC  +  H+ NC K  +P
Sbjct: 764 VKNGCSNMVKHIQNCHKFNIP 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,789
Number of Sequences: 5004
Number of extensions: 37611
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)