Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325D08f
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 47 7e-07
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 47 7e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 47 9e-07
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 46 2e-06
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 41 4e-05
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 38 3e-04
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo... 37 7e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 7e-04
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 34 0.005
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 34 0.005
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 34 0.007
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 34 0.007
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 33 0.015
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 30 0.082
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.14
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 29 0.14
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 29 0.19
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 2.3
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 3.1
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 3.1
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 3.1
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 22 3.8
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 4.1
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 4.1
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 4.1
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 24 5.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 7.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 24 7.1
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 24 7.1
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.4
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 23 9.4
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 47.2 bits (107), Expect = 7e-07
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 67 RAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVG--SSQRTGRFGTFPGKICKRI 228
RA+Y Y+ P E++LN DT+ VL + DGW+ G S GR G FP + +
Sbjct: 358 RALYAYKATLPSEIDLNVDDTLVVLNRQKDGWWKGLVVSPTVGRIGLFPSNYIEEL 413
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 47.2 bits (107), Expect = 7e-07
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 67 RAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQR-----TGRFGTFPGKICKRIN 231
R Y + P+ +EL+L +GD + VL++ D+GW+VG TG G FP C +
Sbjct: 427 RMKYSFEPETENELKLKKGDLLLVLKEIDEGWWVGEKLGEDGVFTGNTGMFPSNYCVPAH 486
Query: 232 CEIPKSKRYRLIFK 273
P K +R K
Sbjct: 487 ---PWDKTFRAFLK 497
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 46.8 bits (106), Expect = 9e-07
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 43 TNAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFGTFP 207
T P +Y Y P+ +E+EL E + + +LE DDGW++G + + G+ G FP
Sbjct: 723 TQPTKTPAIVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGENSK-GQQGLFP 776
Score = 30.7 bits (66), Expect = 0.062
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = +1
Query: 19 NTEPLYVDTNAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFG 198
N P +A+Y Y+ Q +EL E + + ++ D W+ G G G
Sbjct: 790 NNPPAEPQAGGPGKSVKAIYDYQAQEDNELSFFEDEIIANVDCVDPNWWEGECH--GHRG 847
Query: 199 TFPGKICKRI 228
FP + I
Sbjct: 848 LFPSNYVEEI 857
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 45.6 bits (103), Expect = 2e-06
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +1
Query: 52 EAIPYRAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVG-----SSQRTGRFGTFPGKI 216
E + +A+Y + +N EL+L+ GD + V E+ WY+G +++ G G FP
Sbjct: 280 ETVFVKAIYSFTGRNEKELDLHTGDVIQVSEQLGPDWYMGEKVNSKAEKLGNSGMFPVNY 339
Query: 217 CKRI-NCEIPKSKRYRLIFKTAPEVKR 294
C RI + + KS R + + A ++R
Sbjct: 340 CTRIYDLHVQKSHETRSL-ERARSIRR 365
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 41.1 bits (92), Expect = 4e-05
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 70 AMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGS--SQRTGRFGTFPGKICKRI 228
A+Y Y+ Q P+E+ +GDT+ VL +DGW+ G + + G FP + +
Sbjct: 873 ALYDYQAQIPEEISFQKGDTLMVLRTQEDGWWDGEIINVPNSKRGLFPSNFVQTV 927
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 38.3 bits (85), Expect = 3e-04
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 70 AMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVG--SSQRTGRFGTFPGKICKRI 228
A+Y Y P+E+ +GDT+ VL+ +DGW+ G + G FP + I
Sbjct: 614 ALYDYDAAIPEEISFRKGDTIAVLKLYEDGWWEGFVVGEDDHNRGQFPSNFVREI 668
>SPCC24B10.13 |skb5||Shk1 kinase binding protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 37.1 bits (82), Expect = 7e-04
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 70 AMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFGTFPGKICK 222
A+Y + P + +EL G + +L + DGW + +GR G P K
Sbjct: 87 ALYDFEPLHDNELGFTTGQRLCILSESSDGWLIAYDDASGRSGLVPETFVK 137
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 7e-04
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 70 AMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGS---SQRTGRFGTFP 207
A+Y YR D+LE + G + V+ D WY G+ S + G+FP
Sbjct: 10 ALYPYRSSFSDDLEFDPGQVIDVVSNLDGDWYTGTYVDSDGNRKIGSFP 58
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 34.3 bits (75), Expect = 0.005
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 94 NPDELELNEGDTVYVLEKCDDGWYVG-SSQRTGRFGT 201
NP L+ + GDT+ V+E +DGW G S++ G F T
Sbjct: 16 NPSFLKFSAGDTIIVIEVLEDGWCDGICSEKRGWFPT 52
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 34.3 bits (75), Expect = 0.005
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 67 RAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFGTFP 207
RA+Y + + +L+ EGD + L D W++G T G FP
Sbjct: 12 RALYAWPGEREGDLKFTEGDLIECLSIGDGKWWIGRHINTNTQGIFP 58
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 33.9 bits (74), Expect = 0.007
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 67 RAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFGTFPGKICKRI 228
RA+Y + EL +GD + VLE W+ GS + G FP +R+
Sbjct: 221 RALYDFAATEQGELSFKKGDIILVLESVYKDWWKGSCKNA--VGIFPVNYVQRV 272
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 33.9 bits (74), Expect = 0.007
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 67 RAMYKYRPQNPDELELNEGDTVYVLEK--CDDGWYVGSSQRTG-RFGTFPGKICK 222
RAMY + + P +L +GD + ++E+ D W+ G R G R G FP K
Sbjct: 377 RAMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTG---RIGYREGIFPANYVK 428
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 32.7 bits (71), Expect = 0.015
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 SGVDLNNTEPLYVDTNAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEK-CDDGWYVGSS 177
S V LN+ V + ++ +A+Y Y Q+ EL + EGD + V + +GW G
Sbjct: 568 SYVKLNDELNTSVTLDGDSSYVKALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEGI- 626
Query: 178 QRTGRFGTFP 207
G G FP
Sbjct: 627 -LNGVTGQFP 635
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 30.3 bits (65), Expect = 0.082
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +1
Query: 70 AMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFGTFPGKICKRINCEIPKS 249
AMY + + +L + G+ + VLE ++ W+ G + G+ G FP + + K+
Sbjct: 147 AMYDFPGPDAGDLGFHAGEVIIVLEHVNNDWWRG--ELNGKEGIFPSNYVRLLEDSAVKA 204
Query: 250 K 252
+
Sbjct: 205 Q 205
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.14
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 88 PQNPDELELNEGDTVYVLEKCDDGWYV 168
P+N E+ + E + V +LEK +D WY+
Sbjct: 28 PENEREISIVEDEIVCLLEKGEDDWYL 54
Score = 24.2 bits (50), Expect = 5.4
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +1
Query: 34 YVDTNAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEKCDDGW-YVGSSQRTG 189
Y+ + +A+Y Y Q+ DE+ T+ D W VG + G
Sbjct: 75 YITEAEPSTKMKALYDYTQQSVDEISFQADQTLDCYGDTDSDWILVGFNNNFG 127
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 29.5 bits (63), Expect = 0.14
Identities = 8/35 (22%), Positives = 23/35 (65%)
Frame = +1
Query: 64 YRAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYV 168
Y A+Y + ++P+E+ + + + + +++K GW++
Sbjct: 1111 YLALYDFAGRSPNEMTIKKDEIIEIVQKEPSGWWL 1145
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.19
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 76 YKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFGTFPGKI 216
+ + + PDELE G+ + ++ + + W V ++ GR G PG I
Sbjct: 132 FDFAAERPDELEAKAGEAIIIIARSNHEWLV--AKPIGRLGG-PGLI 175
Score = 27.5 bits (58), Expect = 0.58
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 67 RAMYKYRPQNPDELELNEGDTVYVL-EKCDDGWYVGSSQRTGRFGTFP 207
RA+Y Y + E+ +GD +V+ + D WY + G G P
Sbjct: 30 RALYDYTARKATEVSFAKGDFFHVIGRENDKAWYEVCNPAAGTRGFVP 77
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 2.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 293 RFTSGAVLKISRYL-FDFGISQLILLQILPGKVPKRPVLW 177
++ SG V++ L F G+S IL +L G P+ LW
Sbjct: 100 QWNSGKVVRFRDKLSFALGVSTCILTALLVGMAPESMHLW 139
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 194 SVPSQVKFAKELTVKFQNQK 253
SVP +F++EL VK +N+K
Sbjct: 95 SVPRSQRFSRELNVKKENKK 114
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 3.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 303 HLXPLYFRCCLKNQSVPF 250
HL PL++R L +VPF
Sbjct: 278 HLRPLFYRISLTEMAVPF 295
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 3.1
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 102 VRILRPVF-VHRTIWYGFGISVD 37
V I P + VHRT+W G++VD
Sbjct: 131 VYISNPTWPVHRTLWEKLGVTVD 153
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 22.2 bits (45), Expect(2) = 3.8
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +1
Query: 46 NAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEKCDDGW 162
+ + P + + K+ +N L E DTVY + W
Sbjct: 86 SGQVCPIKKLIKHSFENSRVFALTECDTVYYSYDNGENW 124
Score = 20.6 bits (41), Expect(2) = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 160 WYVGSSQRTGRFGTFPGKICK 222
+ + ++Q GT+ GKICK
Sbjct: 149 YVIFNNQYCSSSGTWVGKICK 169
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 24.6 bits (51), Expect = 4.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 299 YXRFTSGAVLKISRYLFDFGISQLILLQILPGKV 198
Y FT+ A + IS+Y F G+S L + + G+V
Sbjct: 301 YLLFTAFAEVWISQYHFTSGLSGLTYISLSIGQV 334
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 335 LVSSR*RYPSTTYXRFTSGAVLKISRY 255
++S R + TY + +GA+L ISRY
Sbjct: 554 VISGRELHSHGTYLVYLNGAILGISRY 580
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 228 NSFANFTWEGTEAPSSLARADVPAIVAFLQYVHRITFVQFELVRILRPV 82
NSF +FT E + P L ++ ++ F+Q++ ++ + VR + PV
Sbjct: 382 NSF-DFTLENDQVPPRLIASECTSLEVFIQHI-TLSRILSHFVRKVYPV 428
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/57 (19%), Positives = 25/57 (43%)
Frame = +1
Query: 13 LNNTEPLYVDTNAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQR 183
+ ++E LY+ + + Y+ +N + +L E + C DG Y + ++
Sbjct: 23 IGSSEQLYMTHDERYLDVLQQYEVETENKRDFDLEEEQWGVLSGSCVDGTYWSAEEK 79
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 169 GSSQRTGRFGTFPGKICKRINCEIPKSKRYRL 264
G+ TG TF K +I C +PKS Y +
Sbjct: 111 GAGVMTGMPYTFMQKEFGQIGCTLPKSGEYAI 142
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 41 TLMPKPYHIVRCTNTGLK 94
TL+P+ +H++R T TG++
Sbjct: 613 TLVPRLFHLMRYTLTGVR 630
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 224 LLQILPGKVPKRPVLWLEPTYQPSS 150
L Q++ + P+R V W+ ++PSS
Sbjct: 518 LQQLVAMREPERSVKWMRCCFEPSS 542
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 243 WNFTVNSFANFTWEGTEAPSSLA 175
WNF+ NSF ++ SS+A
Sbjct: 136 WNFSCNSFPEYSSYSASETSSVA 158
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 273 LKNQSVPF*FWNFTVNSFANFTWEGT 196
LK PF +WNF V N W G+
Sbjct: 426 LKKDFFPFVYWNFAVR---NGKWYGS 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,126
Number of Sequences: 5004
Number of extensions: 28309
Number of successful extensions: 103
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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