Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325D08f
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 33 0.043
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 33 0.057
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743... 29 1.2
03_05_0707 - 27026366-27027241 28 2.2
12_02_0903 - 24179533-24180120 27 2.9
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 27 2.9
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 27 2.9
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 27 2.9
01_04_0034 + 15318509-15319567 27 5.0
05_03_0326 - 12444830-12445074,12445218-12445425 26 6.6
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226... 26 8.7
10_08_0994 + 22107987-22108874 26 8.7
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 33.5 bits (73), Expect = 0.043
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 1 SGVDLNNTEPLYVDTNAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQ 180
+GV + N + E A+ YR ++ EL L GD + V + ++GW G +
Sbjct: 310 NGVFMRNPTVAELVETVEFFLAEAIQSYRAESETELNLAAGDYIVVRKVSNNGWAEGECR 369
Query: 181 RTGRFGTFP 207
G+ G FP
Sbjct: 370 --GKAGWFP 376
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 33.1 bits (72), Expect = 0.057
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 67 RAMYKYRPQNPDELELNEGDTVYVLEKCDDGWYVGSSQRTGRFG 198
+A+Y + DEL L G+ V + E DGWY +R GR G
Sbjct: 1088 KALYDFTAGGDDELSLTAGEDVEI-EYEVDGWYYVKKKRPGRDG 1130
>03_02_0762 -
10968888-10969466,10972522-10974175,10974277-10974359,
10974435-10974533,10974620-10974706,10974782-10974838,
10974939-10975065,10975344-10975465,10975685-10975732,
10975867-10976268
Length = 1085
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 202 RYRSAQFSGSSRRTSHRRI-SPVRTPYHLRSVRARQDFEAGICTS 71
R+ S SS+ SHR SP YH + R R D EAG C S
Sbjct: 444 RHASKSDQESSKGESHRYTPSPADDRYHKATKRQRMD-EAGACIS 487
>03_05_0707 - 27026366-27027241
Length = 291
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 121 GDTVYVLEKCDDGWYVGSSQRTGRFGTFPGKIC 219
GD +L DD + G + RTG + TF G C
Sbjct: 98 GDEAKLLVAEDDAYVAGFANRTGHWHTFRGGRC 130
>12_02_0903 - 24179533-24180120
Length = 195
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = -3
Query: 235 HS*FFCKFYLGRYRSAQFSGSSRRTSHRRISPVRTPYHLRSVRARQDFEAGICTSHDM 62
H F C F + ++ S+Q G + R S + YH + + EA H +
Sbjct: 69 HKVFSCNFCMRKFFSSQALGGHQNAHKRERSAAKRSYHAQRMMMGLPLEAHAAFVHSL 126
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 193 SAQFSGSSRRTSHRRISPVRTPYHLRSVRARQDFEAGICTSHDM 62
S +SG+ R+SP++ Y +S+ ++ D+E G T+ +
Sbjct: 403 SVDYSGTKESRGEMRLSPLQNSYP-QSLASQDDYETGTQTASSL 445
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 4 GVDLNNTEPLYVDTNAEAIPYRAMYKYRPQNPDELELNEGDTVYVLEKC 150
G+D N ++ I RAM P NP L+EG+ +L+ C
Sbjct: 198 GLDFVNLRQTVASARSKGITVRAMVIINPGNPTGQCLSEGNIKELLKFC 246
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 37 VDTNAEAIPYRAMYKYRPQNPDELELNEGDTV 132
VD NA A + Q PDELE+ +GD +
Sbjct: 56 VDMNAIAFLFDGRRLRGEQTPDELEMEDGDEI 87
>01_04_0034 + 15318509-15319567
Length = 352
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 91 QNPDELELNEGDTVYVLEK 147
Q PD+L+L +GDT++ + +
Sbjct: 331 QTPDDLKLEDGDTIHAIAR 349
>05_03_0326 - 12444830-12445074,12445218-12445425
Length = 150
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 217 KFYLGRYRSAQFSGS-SRRTSHRRISPVRTPYHLR 116
+ ++ R+ S+ SGS S +T R PVR P H R
Sbjct: 34 EMFMARWLSSACSGSTSTKTMSRWRRPVRAPEHCR 68
>11_01_0302 +
2261489-2261738,2261917-2262064,2262124-2262205,
2262501-2262566,2262609-2262686,2262794-2262808,
2263618-2263764
Length = 261
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 205 GRYRSAQF-SGSSRRTSHRRISPVRTPYHLRSVRARQDFEAGICTS 71
GR+R F G R SHR + RTP L S A + +C++
Sbjct: 3 GRFRGLGFRGGGGGRRSHRGGAAARTPSRLASGIAARWHRLRMCST 48
>10_08_0994 + 22107987-22108874
Length = 295
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 118 EGDTVYVLEKCDDGWYVGSSQRTGRFGTFPGKIC 219
+ D +L DD + G + RTG + TF G C
Sbjct: 96 DDDQAKLLVAEDDAYVAGFANRTGHWHTFRGGRC 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,454,051
Number of Sequences: 37544
Number of extensions: 182983
Number of successful extensions: 529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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