Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    28   0.97 
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.7  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   2.2  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   9.0  

>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 14  TIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 115
           ++R HS+F Y + +SP    + A  G D  V+VF
Sbjct: 184 SLRVHSKFVYDVRYSP-NDERFASAGADGKVYVF 216


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = -3

Query: 141 CPHASERGVNTCTSESQPQSASWCGRSGLHASPYVNSEWC 22
           C +   RG+   T  S      W     +H S +V   WC
Sbjct: 38  CMYIYSRGITNDTYSSDTYELDWYDLGFVHFSKWVELAWC 77


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 8   LETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 115
           L T+  H +  YGL WSP     LA    D  V ++
Sbjct: 318 LHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIW 353



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 5   PLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLV 106
           P   ++ H+   +GL W+P  P  LA    D ++
Sbjct: 174 PQAVLKGHTAEGFGLCWNPNLPGNLATGAEDQVI 207


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 506 FISEGKXIILNTIYTFSQQVP 444
           F+S     IL+TI+TF+  +P
Sbjct: 149 FLSHASPAILHTIFTFTLSIP 169


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 14  TIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 115
           T+R H      + W P    +LA CG D +V ++
Sbjct: 310 TLRGHKGDVNAVKWMPGSKSKLATCGDDCVVSLW 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,262
Number of Sequences: 5004
Number of extensions: 38830
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)