Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325D07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0241 - 8204430-8205398 35 0.034
03_03_0256 + 15898702-15900420 34 0.060
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 29 1.7
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342... 29 3.0
05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562... 28 4.0
10_08_0693 - 19926103-19926585 28 5.2
07_03_1160 - 24430240-24431268 28 5.2
03_01_0187 - 1492732-1492935,1493708-1493765,1494871-1494947,149... 28 5.2
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 27 6.9
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 27 6.9
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 27 6.9
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156... 27 9.1
09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659 27 9.1
02_04_0129 + 20020388-20021215 27 9.1
>02_02_0241 - 8204430-8205398
Length = 322
Score = 35.1 bits (77), Expect = 0.034
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 2 DPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFTP 121
+P+ +R H+ +GL W+P+R WD + +++P
Sbjct: 102 NPVRLLREHAREVHGLDWNPVRRDAFLSASWDDTLKLWSP 141
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 23 HHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 115
HH+EF G+ S L LA GWD +++V+
Sbjct: 283 HHTEFVAGIDMSVLVEGLLASTGWDEMIYVW 313
>03_03_0256 + 15898702-15900420
Length = 572
Score = 34.3 bits (75), Expect = 0.060
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 11 ETIRHHSEFTYGLAWSPLRPHQLADCGWDSLV 106
+T++ H+ G W PL ++A CGWD ++
Sbjct: 538 KTLKCHNGVCIGCEWHPLETSKVATCGWDGVI 569
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 2 DPLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVF 115
D +ET+ H+ ++W+P PH LA D + ++
Sbjct: 478 DLIETLPGHTGTVNCVSWNPANPHMLASASDDHTIRIW 515
>12_01_1097 +
11531899-11532277,11532482-11533287,11534015-11534284,
11534939-11535454
Length = 656
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 337 ATRRPPDVPHPRTRGGPLRSPN 402
A R+PP P PR GP SP+
Sbjct: 383 AQRKPPSAPKPRKGSGPSSSPH 404
>05_03_0471 -
14455543-14455650,14455925-14456002,14456121-14456285,
14457151-14457261,14457863-14458024,14458462-14458538,
14459526-14460177
Length = 450
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 305 SVLEYTGIVPTRLGVPQTSP 364
++LEY+G+VP+ G PQ P
Sbjct: 49 ALLEYSGVVPSGPGAPQAGP 68
>10_08_0693 - 19926103-19926585
Length = 160
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 337 RRYNTSVFENRVTSIDIKAFIKRAPLARQATFDPDTSSFFTHTVHFGTLILRFHS-HFCF 161
RR N ++ D++ K A + R A DP T + F H + + + HS FCF
Sbjct: 38 RRANVKGEDDARGDDDVEDIAKMATVWRAAKGDPATRTLFIHGLGWSIEVDDLHSVFFCF 97
>07_03_1160 - 24430240-24431268
Length = 342
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 331 TYATRRPPDVPHPRTRGGPLRSPNV 405
TY RP P P + G PL +PNV
Sbjct: 150 TYEPSRPDQPPQPISDGPPLPNPNV 174
>03_01_0187 -
1492732-1492935,1493708-1493765,1494871-1494947,
1495086-1495160,1495259-1495315,1495451-1495567,
1495805-1495915,1496029-1496151,1496304-1496393,
1496480-1496605,1496687-1496740,1496975-1497055,
1497147-1497254,1497443-1497514,1497626-1497688,
1498417-1498629
Length = 542
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 505 LSRKANX*SLIQSIHSVSKFPVRTSVAKFNIYKRHLDSLEVHPLSVDGGRLGDA*SRRY 329
+ R+ + LI+ + V V S +K + ++D E+ V+ GRLG+ +RRY
Sbjct: 72 IKREISTMKLIKHPNVVQLHEVMASKSKIYMVLEYVDGGELFDKIVNSGRLGEDEARRY 130
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 5 PLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFTPRS 127
P++ H + Y + WSPL +L + +H++ P S
Sbjct: 220 PVKIFGSHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTS 260
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 17 IRHHSEFTYGLAWSPLRPHQLADCGWDSLV 106
+R H YGLAWSP++ L +D +
Sbjct: 158 LRGHEAEGYGLAWSPMKEGLLLSGSYDKKI 187
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 50 AWSPLRPHQLADCGWDSL 103
+W P+R H + D GW +L
Sbjct: 351 SWEPVRCHDVVDMGWSNL 368
>12_01_0207 -
1559491-1559544,1559806-1560161,1560244-1560363,
1561523-1561568,1561741-1561858,1561981-1562093,
1562586-1562658,1562743-1562882,1563005-1563075,
1563228-1563396,1563594-1563659,1564052-1564150,
1564271-1564444,1564720-1564798,1564901-1565007,
1565391-1565435
Length = 609
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 5 PLETIRHHSEFTYGLAWSPLRPHQLADCGWDSLVHVFTPRS 127
P++ H + Y + WSPL +L + +H++ P S
Sbjct: 220 PVKIFGGHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTS 260
>09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659
Length = 522
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 244 FDPDTSSFFTHTVHFGTLILRFHSHFCFRTRSLIL 140
F PD S F + H G L+LR H F R ++
Sbjct: 79 FVPDLSHFSLYDSHHGLLLLRHHKCEYFNPRLFLV 113
>02_04_0129 + 20020388-20021215
Length = 275
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 331 TYATRRPPDVPHPRTRGGPLRSPN 402
++ R+PP VP PR GG + P+
Sbjct: 29 SHKVRKPPVVPQPRGGGGVVAGPS 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,694
Number of Sequences: 37544
Number of extensions: 262314
Number of successful extensions: 722
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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