Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   0.82 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   5.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 111 DILSKQPAFKQLTETASTLMGLVGD 185
           DIL  Q + K ++ET +   GLV D
Sbjct: 297 DILWTQASAKAISETGALFFGLVSD 321


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 515 ANWVPGPPLEARVHG 471
           ANW   PPL    HG
Sbjct: 39  ANWYQYPPLNPMWHG 53


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 515 ANWVPGPPLEARVHG 471
           ANW   PPL    HG
Sbjct: 5   ANWYQYPPLNPMWHG 19


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 108 DDILSKQPAFKQLTETASTLMGLVGD 185
           +DIL+ Q   K +++     +GLVG+
Sbjct: 297 EDILNTQSLAKAVSKNGVLFVGLVGN 322


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 344 RHGAVPRQEEAAPGPYGETA 403
           R   + R E   P P+ ETA
Sbjct: 172 RRAQIRRNERRTPDPHDETA 191


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 360 LAKRKLLPVHMEKLLRQMDELAEKTEEI 443
           L + +L    +E+ +R++DE  ++T+E+
Sbjct: 367 LDQEQLKSKKLEESMRKLDEEMKRTDEL 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,378
Number of Sequences: 438
Number of extensions: 2417
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)