Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    28   0.97 
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    26   3.0  
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   3.0  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.9  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   6.8  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   6.8  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 353 DSNHISSTLTHTTGTQSNGRAATHTARITLAPNLTLN 463
           +SNHIS  L+   G   NG+   +T+R  +   L +N
Sbjct: 814 NSNHISCPLSSIKGVSVNGKRLVYTSRALVEWALVVN 850


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 514 REHLPHLISTSNVAKFRI*RKIGG 443
           REH+P++IST++   F    K  G
Sbjct: 128 REHIPYIISTASATSFEDIEKASG 151


>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 232

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 138 NNLKVYTSYNVLDGIRIKIYTIDTYHYSYKL 230
           +N  VYT Y+ ++ +     ++D YH  YKL
Sbjct: 128 SNFSVYTRYDQVETMEKYEISMDRYHGRYKL 158


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 306  NMVISLRCGCFMFLNRNTNKLFKLSTACSYNG 211
            NM I L    FM +  N   ++ + T C YNG
Sbjct: 1361 NMFIMLSVQLFMVVLINLGAIYHVVTVCYYNG 1392


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 129 SKYNNLKVYTSYNVLDGIRIKIYTIDTYHYSY 224
           S   N+K++T     + IRI +  +  YHY +
Sbjct: 11  SNLQNIKIFTWKANFESIRINLQHMHLYHYEH 42


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 378 SHTQLVHNRTDARRHTQRASHSPPILR 458
           S T ++ N   + RH Q+A H  PILR
Sbjct: 252 SGTLVISNGWISYRHLQKAFHQIPILR 278


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 285 CGCFMFLNRNTNKLFKLSTACSYNGMY 205
           CG FM  + NTNK +K++ A    GM+
Sbjct: 125 CGLFMVTSSNTNK-WKIAFASFLLGMF 150


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 337 RGERDGFKSHFEYTHTHNWYTIERTRGDTHSAHHTRPQSYVK 462
           +G RDGFK+ +E         + R    T SA   RP S+ K
Sbjct: 320 KGVRDGFKTQYEQLQK----DVSRRAVATTSASTIRPNSHYK 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,144
Number of Sequences: 5004
Number of extensions: 43737
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)