Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1046 + 8247777-8248029,8248118-8248245,8248352-8248478,824...    29   2.3  
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    28   4.0  
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256...    28   4.0  
02_05_1361 + 35948295-35948464,35948671-35948728                       27   6.9  
02_05_0384 - 28501536-28501777,28502408-28502630                       27   9.1  

>06_01_1046 +
           8247777-8248029,8248118-8248245,8248352-8248478,
           8248570-8248682,8248770-8249321
          Length = 390

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +2

Query: 290 NDITIFRLIYIAHTPLAANATDSNHISSTLTHTTGTQSNGRAATHTARITLAPNLTLNAE 469
           +D T F      HT  AAN   ++ + + +      Q NG A T  A  T AP + +   
Sbjct: 318 DDRTAFVFWDAYHTSDAANQVIADRLYADMVSAGAVQGNGNATTAAAASTPAPRVVVGGG 377

Query: 470 LS 475
            S
Sbjct: 378 AS 379


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 122 TYSLEALYIKTQRVDKFILLLDFSIWL 42
           +YS   +Y++  +V  F+LL  FS W+
Sbjct: 288 SYSENTIYVRHAKVQNFVLLYVFSSWM 314


>03_01_0329 +
           2558726-2559112,2559214-2559449,2559537-2559663,
           2560190-2560326,2560467-2560626,2560828-2561106,
           2561750-2561920,2562636-2562717,2563397-2563623,
           2563682-2563727,2564199-2564281,2564376-2564492,
           2564965-2565036
          Length = 707

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 266 RNIKHPHLNDITIFRLIYIAHTPLAANATDSNHISSTLTHTTGTQSNGR 412
           +  + P  + +TI R +Y  +  L  N +D +HI       TG +   R
Sbjct: 211 KEFEDPAFSTVTIQRDLYYGYDTLMENVSDPSHIEFAHHKVTGRRDRAR 259


>02_05_1361 + 35948295-35948464,35948671-35948728
          Length = 75

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 315 FTLHILHSRRTRRIQITFRVHSHTQLVH--NRTDARRHTQRA 434
           FTL +     T R Q+T R+HS   L+H  +R   RR  +R+
Sbjct: 26  FTLGVSDDHYTERSQLTPRLHSEPLLLHLIDRIKYRRPLRRS 67


>02_05_0384 - 28501536-28501777,28502408-28502630
          Length = 154

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 278 VLCSLIEIQINSSSYLQLVAIMVCIYCVN 192
           VLCS I   IN   + Q ++I VC  C++
Sbjct: 75  VLCSEISSLINQVIFEQFLSIFVCNLCIH 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,752
Number of Sequences: 37544
Number of extensions: 247085
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)