Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016425-10|AAB65334.2|  336|Caenorhabditis elegans Serpentine r...    29   2.7  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68879-5|CAA93087.2|  188|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF010240-1|AAB65418.1|  188|Caenorhabditis elegans glutathione S...    27   8.1  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   8.1  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   8.1  

>AF016425-10|AAB65334.2|  336|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 13 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 149 SIHFL*C-TRWNSN*NLHNRYIPL*LQAVDNLKSLFVFRLRNIKHPHLNDITIFRL 313
           S  F  C T  +S  + +  YIPL L  V ++ S+ +FR   IK+  L ++    L
Sbjct: 173 SFTFFYCQTLVSSTISTNETYIPLLLIIVSHIVSILIFRCLEIKNKKLREVVDINL 228


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +2

Query: 299  TIFRLIYIAHTPLAANATDSNHISSTLTHTTGTQSNGRAATHTARITLAPNLTLNAE 469
            T++RL++    P +   T +  I+   THT   +  G+A      +     +T++ +
Sbjct: 906  TVYRLLFRYRNPTSVPVTATVTINPRFTHTHDVEQTGKATFAPGDLPAMKEITVDGK 962


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +2

Query: 299  TIFRLIYIAHTPLAANATDSNHISSTLTHTTGTQSNGRAATHTARITLAPNLTLNAE 469
            T++RL++    P +   T +  I+   THT   +  G+A      +     +T++ +
Sbjct: 906  TVYRLLFRYRNPTSVPVTATVTINPRFTHTHDVEQTGKATFAPGDLPAMKEITVDGK 962


>Z68879-5|CAA93087.2|  188|Caenorhabditis elegans Hypothetical
           protein K08F4.6 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 221 LQAVDNLKSLFVFRLRNIKHPHLN 292
           LQ  DNL +L   RL   K PHLN
Sbjct: 159 LQIADNLSTLINIRLFAEKEPHLN 182


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 457  RKIGGEC--DARCVCRRASVRLCTSCVCECT 371
            R IG  C  D  CV +   + +C + VC+C+
Sbjct: 1378 RPIGARCQLDGECVGQAEGLSMCHAGVCQCS 1408


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 457 RKIGGEC--DARCVCRRASVRLCTSCVCECT 371
           R IG  C  D  CV +   + +C + VC+C+
Sbjct: 720 RPIGARCQLDGECVGQAEGLSMCHAGVCQCS 750


>AF010240-1|AAB65418.1|  188|Caenorhabditis elegans glutathione
           S-transferase protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 221 LQAVDNLKSLFVFRLRNIKHPHLN 292
           LQ  DNL +L   RL   K PHLN
Sbjct: 159 LQIADNLSTLINIRLFAEKEPHLN 182


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +2

Query: 299  TIFRLIYIAHTPLAANATDSNHISSTLTHTTGTQSNGRAATHTARITLAPNLTLNAE 469
            T++RL++    P +   T +  I+   THT   +  G+A      +     +T++ +
Sbjct: 906  TVYRLLFRYRNPTSVPVTATVTINPRFTHTHDVEQTGKATFAPGDLPAMKEITVDGK 962


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +2

Query: 299  TIFRLIYIAHTPLAANATDSNHISSTLTHTTGTQSNGRAATHTARITLAPNLTLNAE 469
            T++RL++    P +   T +  I+   THT   +  G+A      +     +T++ +
Sbjct: 906  TVYRLLFRYRNPTSVPVTATVTINPRFTHTHDVEQTGKATFAPGDLPAMKEITVDGK 962


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,891,447
Number of Sequences: 27780
Number of extensions: 248381
Number of successful extensions: 663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)