Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D01f
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    27   1.2  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   3.7  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    26   3.7  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.5  

>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 3   SRWXSPIETSVPPSPRIRI 59
           S+W +P+ETS+P +P ++I
Sbjct: 462 SKWINPLETSLPYAPDMKI 480


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 170 HGYISRQFTRRYALPENCNPDT 235
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 284 RTPAATKNERAVPITQTGPVRKEIKE 361
           R PAA + +  VPITQ    + E+K+
Sbjct: 172 RRPAAMRAQTLVPITQPDSKKNELKQ 197


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 311 ARSSWQPESWERSRS 267
           ++  WQP+SW+ SR+
Sbjct: 70  SKEGWQPKSWKSSRN 84


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 275 IAPRT-PAATKNERAVPITQTGPVRKEIKEPTAXAE 379
           +AP + PA +K     P+T  GP+   I+  T   E
Sbjct: 675 LAPMSIPAISKRSLTKPVTSCGPLLNNIRRLTVNLE 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,823
Number of Sequences: 5004
Number of extensions: 21529
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)