Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325D01f
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0483 - 8804021-8804485 45 3e-05
03_02_0478 + 8775892-8776377 45 3e-05
03_02_0484 + 8805053-8805538 45 4e-05
03_02_0485 - 8808139-8808618 44 7e-05
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 43 2e-04
01_01_0229 - 1943473-1943922 42 2e-04
01_01_0231 + 1951047-1951499 42 3e-04
01_01_0227 + 1933247-1933699 41 5e-04
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 38 0.006
02_01_0222 + 1450233-1450766 36 0.014
11_02_0041 - 7669692-7670312 33 0.13
02_02_0077 - 6586638-6587165 33 0.17
03_05_0543 - 25404630-25405408,25405461-25405605 32 0.23
12_02_1174 - 26696869-26698191 31 0.69
02_01_0760 - 5639315-5639685,5640072-5640360 31 0.69
06_01_1017 - 7951985-7952425 30 0.92
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 2.8
11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381... 27 6.5
10_07_0141 + 13347648-13348331 27 6.5
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 27 8.6
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 27 8.6
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 27 8.6
>03_02_0483 - 8804021-8804485
Length = 154
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +2
Query: 77 DVXHFSPEEISVKTXDGYXI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 232
DV EE+ V+ DG + + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 233 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
+++ + +GVLTV P+ + +++ IT
Sbjct: 123 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIT 153
>03_02_0478 + 8775892-8776377
Length = 161
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +2
Query: 77 DVXHFSPEEISVKTXDGYXI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 232
DV EE+ V+ DG + + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 233 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
+++ + +GVLTV P+ A + +++ I+
Sbjct: 130 QIKASM-ENGVLTVTVPKEEAKKPDVKSIQIS 160
>03_02_0484 + 8805053-8805538
Length = 161
Score = 44.8 bits (101), Expect = 4e-05
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +2
Query: 77 DVXHFSPEEISVKTXDGYXI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 232
DV EE+ V+ DG + + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 233 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
+++ + +GVLTV P+ + +++ +T
Sbjct: 130 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQVT 160
>03_02_0485 - 8808139-8808618
Length = 159
Score = 44.0 bits (99), Expect = 7e-05
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +2
Query: 77 DVXHFSPEEISVKTXDGYXI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 232
DV EE+ V+ DG + + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 233 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
+++ + +GVLTV P+ + +++ I+
Sbjct: 128 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIS 158
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 77 DVXHFSPEEISVKTXDG-YXIVEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 232
D+ EE+ V+ +G ++ G+ E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 233 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
V++ L +GVLTV P+ +A+ I+
Sbjct: 119 QVKAGL-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0229 - 1943473-1943922
Length = 149
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 77 DVXHFSPEEISVKTXDG-YXIVEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 232
D+ EE+ V+ +G ++ G+ E++ D+ + R QF RR+ LPEN D
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 233 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
V++ + +GVLTV P+ +A+ I+
Sbjct: 118 QVKASM-ENGVLTVTVPKAEVKKPEVKAIEIS 148
>01_01_0231 + 1951047-1951499
Length = 150
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 77 DVXHFSPEEISVKTXDG-YXIVEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 232
D+ EE+ V+ +G ++ G+ E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 233 TVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
V++ + +GVLTV P+ +A+ I+
Sbjct: 119 QVKAGM-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0227 + 1933247-1933699
Length = 150
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 137 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERA 316
V+GK++ER S +F RR+ LP D V + + +GVLTV P+ +A
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKKPQLKA 145
Query: 317 VPIT 328
+PI+
Sbjct: 146 IPIS 149
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Frame = +2
Query: 41 ITSNKDKFQVNLDVXHFSPEEISVKTXDGYXIVEGKHEERQDE------HGYISRQ---- 190
+ + + ++ D+ S EE+ V D ++ G+H++ + E G+ +
Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSS 196
Query: 191 FTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATK 304
+ R ALP+ C+ V + L +GVL V P+T K
Sbjct: 197 YDMRLALPDECDKSKVRAEL-KNGVLLVTVPKTEVERK 233
>02_01_0222 + 1450233-1450766
Length = 177
Score = 36.3 bits (80), Expect = 0.014
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 182 SRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPIT 328
S +F R LP N N D V + L + GVLT+ P+ + R +PIT
Sbjct: 129 SERFVRTVRLPPNANTDGVHAALDN-GVLTITIPKDNDRKPHARIIPIT 176
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 188 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNE-RAVPITQTG 337
+F RR+ +P + V +RL DGVLTV P+ P E R V I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>02_02_0077 - 6586638-6587165
Length = 175
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 188 QFTRRYALPENCNPDTVESRLSSDGVLTV-IAPRTPAATKNERAVPITQTG 337
+F RR+ LPE+ + D V + DGVLTV + + P K R V + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEY-KDGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 32.3 bits (70), Expect = 0.23
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +2
Query: 56 DKFQVNLDVXHFSPEEISVKTXD-GYXIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 232
+ ++LD F EEI V + G+ G ER SR F + + LP +CN D
Sbjct: 39 NSIHLSLDQLGFKREEIRVLVDNHGHLRTRG---ERPVAGNRWSR-FQKDFQLPADCNVD 94
Query: 233 TVESRLSSDGVLTVIAPRTPA-ATKNERAVPIT--QTGPVRKEIKEPTA 370
+ ++ ++ + + +TP+ T + P+T P + E + P A
Sbjct: 95 GIRAKFENEALTITLPKKTPSPLTPSPTPSPVTPPPQQPPQPEPRRPPA 143
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.7 bits (66), Expect = 0.69
Identities = 25/101 (24%), Positives = 42/101 (41%)
Frame = +2
Query: 68 VNLDVXHFSPEEISVKTXDGYXIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESR 247
V + + F E++ V+ D + ++ E G +F + LP+NC+ D V +R
Sbjct: 26 VEIALPGFRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRAR 84
Query: 248 LSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTA 370
D L + P A AV + ++ E K P A
Sbjct: 85 F-DDHKLIITLPLVAA------AVDVDESSATSPEFKTPPA 118
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 30.7 bits (66), Expect = 0.69
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Frame = +2
Query: 23 RDVGSTITSNKDKFQVNLDVXHFSPEEISVKTXDGYXIVEGK-----HEER-QDEHG--Y 178
R + + +++++++ +V +++ V DG + G+ E+R +D G +
Sbjct: 111 RPLTGKVREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECW 170
Query: 179 ISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 325
+ + LPE+ + + + + DGVL V PR+P ++ V +
Sbjct: 171 AAATYHAGLLLPEDAVAEGITAEVR-DGVLHVTVPRSPERKRSVTEVKV 218
>06_01_1017 - 7951985-7952425
Length = 146
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 188 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 325
+F R ALP + + + + + GVLTV+ P+ PA + R PI
Sbjct: 97 EFAREVALPAEVRVEQIRASVDN-GVLTVVVPKEPAPAR-PRTRPI 140
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 164 DEHGYISRQFTRRYA-LPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGP 340
D+ + + FTR Y+ N RL + ++ P + K++ V T P
Sbjct: 323 DDISTVCKWFTREYSDTTYGKNAQLAAKRLKATQPIST-QPDKEESNKDDLFVEPIYTIP 381
Query: 341 VRKEIKEPTAXAESNET 391
+KE +PT ESN T
Sbjct: 382 AKKEEVQPTKDLESNST 398
>11_04_0438 -
17737040-17737122,17737373-17737496,17737897-17738182,
17738265-17738397,17738742-17738953,17739455-17739816,
17739907-17739937,17744738-17745111
Length = 534
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 364 GLLNLLPDRAGLSDGNSSLVLRGSRSPGSDHGQHSVRGQP 245
G + P RAGLS SS +R + + S G+ S G P
Sbjct: 88 GSADAAPSRAGLSPDPSSRQIRPTMAGSSRVGRRSAAGMP 127
>10_07_0141 + 13347648-13348331
Length = 227
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 173 GYISRQFTRRYALPENCNPDTVESRLSSD-GVLTVIAPRTPAATKNERA 316
G+I+ +F RRY + ++ P+ E+ L+ D +L ++ A N RA
Sbjct: 31 GFITNKFGRRYGVGDHGTPE--EAALAHDRAILAILGAHASPAALNFRA 77
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 367 SGLLNLLPDRAGLSDGNSSLVL 302
SG+L+LL R G SDGN ++L
Sbjct: 1504 SGILSLLITRKGNSDGNDLIIL 1525
>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 367 SGLLNLLPDRAGLSDGNSSLVL 302
SG+L+LL R G SDGN ++L
Sbjct: 1089 SGILSLLITRKGNSDGNDLIIL 1110
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 101 EISVKTXDGYXIVEGKHEERQDEHGYISRQFTRRYALP--ENCNPDTVESRLSSDG 262
+ + +T DGY G+H +R + +R P + +P+T+E+ + +DG
Sbjct: 202 DAATQTEDGYRSSRGRHAQRA-AAAAAQEELSREETSPPTASTSPETLEALIKADG 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,303,146
Number of Sequences: 37544
Number of extensions: 154368
Number of successful extensions: 572
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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